Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0541 ATGGAGACTCTGAAAGCTGCGATACCAGAAAGCCTGAAGCGAACTATAGGGGATAGCGATGTCGATGACCTTGGAAGCACGTGCGCTTCTCTTCACCGCTTCTTTCTCCACTTGGACCCATTTCACCAGATGATCACTGAACTCGCGGATCCAAAGTATGCTCTGTGCGGCAAGAGTAAGGACACTGCCTTTAAATCCAAGCAGCTTGGCAATCACTGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTACACTCAGGCATTGCGCGAGGCTCCATTAGACACCGGTGATATGGAGACTAATCTTGTTGCAACATTATATATCAATCGTGCTACTGTATTGCATAAAATGAGTCTTTTAGTAGAATGCTTACGAGATTGCACTCGAGCTCTTCAAATTTGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTTATTGGGAAATTATGAAAATGCAATTTGTGATCTAAATGTGGCTAAGAGTGTGGAACCTTCAGTGGGTGGGAAGAGACAAATAGAAGGTGAATTGAAAATTCTTTTAGACCAATGCAAAAGCACAACTGCGATAGTACAAATACAACATAAGGAGAACAACTGCAATACTGTGGGTGAGATGCCTCACATAAAGCTACAGTGTGTCTCCACACCTGATAAAGGAAGAGGCATGGTGTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATGCTGAAGAACCCTATGCTATGATAATATTAAAGCAATGTCGGGAAACCCATTGTCATTATTGCTTGAATGACCTGCCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTATTGCTCCCATCAATGCCAGATACGGGCAACTGGGCAAATATTCAAGATTTACCCAGAATATAATGGCTTTTTTAAAAACTTACCCAGTGATCTTGGAGATTATGCTGCTGAAGTTATTCAATGCAATGATTCTGAACAGGAAATTGGGGATATTACTGAACATAAACATGAGTGTCAAGGTGTACATTGGCCTGTGGTACTGCCGTCTGAGATAGCTTTGGCTGGTCGAATAGTAGCTAGGTTTTTGCTAAATAGCACACCTGAAGATATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACAAATGCCATCTGAAAGCAAATTGGATTCACATATATATGCCATTGTATTATTATATTGTCTTCAACACTCTTGTGGAACTATGTTTTCCATAGATGAAGTCTCCATATCACAGGTTGTTTTGGCACTCCTCTCTGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGAAGTTTATTCAACCATTCTTGCCAGCCAAATGTTCATGCATATTTTCTTTCACGCACTCTTTATTTACGAACCACAAATGTTGTAGCAGCTGGGAGTCAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTCAAAGATGAGTATGCGTTTCTTTGTCAGTGTACTGGTTGTTCAGAAGTTAATTTATCTGACATTGTCATCAATGGCTTTCATTGTGCCAATCCAAATTGTTCTGGCACAGTGTTGGAAAGCAGAGTACTTGACTGCGAAAAGCAGAAAAGCAAGCACTTCCTTATTTCTGACCATGTTGACAAGAATGATGACATTTATGAAGTATGTCTTCCTGTTTTCAAACAAAATAGTGCCTCTATTCATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACATGCTGCAGTCAGTAAAGCCTTAACATGCATGAAAAGGTTGCAGGATGCAATATTATCTCAACAAATTTCAAGTACTACTATTTCTGATGCTTTGAGATCTCTTCAATTGCTAAGATTAAATTTGTATGCATTCAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCCCAGGCATTTTGTTTAGTGGGAGAATTACAGTTATCTTTGGATCATTGTAAAGCATCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCATTGGATGATGGTACTGCTGTGGAAAGTATAAGTCGAATAGATGATATCTTATCACGTTATTATGGACTTCATGCAGACTTGGTCTTCCCTTATCTTCAATACCTTAGGAGAGAAATTGAGAAATTTTCAGTGAAGGCTCTCCAATAA 2244 0.3966 METLKAAIPESLKRTIGDSDVDDLGSTCASLHRFFLHLDPFHQMITELADPKYALCGKSKDTAFKSKQLGNHCFSNADYAKALDCYTQALREAPLDTGDMETNLVATLYINRATVLHKMSLLVECLRDCTRALQICPSYAKAWYRRGKANALLGNYENAICDLNVAKSVEPSVGGKRQIEGELKILLDQCKSTTAIVQIQHKENNCNTVGEMPHIKLQCVSTPDKGRGMVSSCVISPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRATGQIFKIYPEYNGFFKNLPSDLGDYAAEVIQCNDSEQEIGDITEHKHECQGVHWPVVLPSEIALAGRIVARFLLNSTPEDIINFVERLELSHCYKQMPSESKLDSHIYAIVLLYCLQHSCGTMFSIDEVSISQVVLALLSVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTNVVAAGSQLELSYGPQVGLWDCKDRLNFLKDEYAFLCQCTGCSEVNLSDIVINGFHCANPNCSGTVLESRVLDCEKQKSKHFLISDHVDKNDDIYEVCLPVFKQNSASIHIQPGYCLKCGSYCDLESSHAAVSKALTCMKRLQDAILSQQISSTTISDALRSLQLLRLNLYAFNKLIAEAEDSIAQAFCLVGELQLSLDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDGTAVESISRIDDILSRYYGLHADLVFPYLQYLRREIEKFSVKALQ 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0541 747 Gene3D Tetratricopeptide repeat domain 489 745 IPR011990 GO:0005515
Aed10g0541 747 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 434 - -
Aed10g0541 747 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 432 737 - -
Aed10g0541 747 ProSiteProfiles SET domain profile. 215 481 IPR001214 GO:0005515
Aed10g0541 747 SUPERFAMILY TPR-like 60 191 IPR011990 GO:0005515
Aed10g0541 747 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Aed10g0541 747 Gene3D Tetratricopeptide repeat domain 38 195 IPR011990 GO:0005515
Aed10g0541 747 SUPERFAMILY SET domain 217 506 IPR046341 -
Aed10g0541 747 Pfam SET domain 226 481 IPR001214 GO:0005515
Aed10g0541 747 Gene3D SET domain 390 480 IPR046341 -
Aed10g0541 747 SMART tpr_5 140 173 IPR019734 GO:0005515
Aed10g0541 747 SMART tpr_5 645 678 IPR019734 GO:0005515
Aed10g0541 747 SMART tpr_5 63 96 IPR019734 GO:0005515
Aed10g0541 747 SMART tpr_5 106 139 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed10g0541 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0541 K24634 - gmx:100783548 1368.6