Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0539 ATGGCTCCTCAAAAGGTTGTACAAACGGTAGACGACACTATTAATGAAAAAGATGAGTCGTCAAAGAAGAAGGACGTGGTTAAAACTTTGTCATTCTTCAAACTTTTGAGCTATGCTGACGTGGTGGATTGGATTATGATGGGTTTGGGAGGTCTAGGTTCGGTTGTGCATGGCATGGCATTTCCCGTTGGATATCTTTTGTTGGGAAAAGCTCTTAATGCTTTTGGGAACAACATCAACGACATAGATGCCATGGTTGTTGCTCTCAAAAAGGTTGTTCCATATGTGTGGTATATGGCTATCGCCACGTTTCCTGCTGGGATACTTGAGATTAGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTTCGGCTAAGATTAGCATATCTAAGAGTAGTCCTAAACCAAGAGATAGGGGCTTTTGATACAGAATTAACAAGTGGGAAAGTCATCAGTGGAATAAGCAAGCATATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTTGCTGTGCAACTTTCATTGCTGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTGACGCTTCTCTGTTTAGTGGTTACAATATCACAAATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCTGCAACTAAATCCTTCACAGAGAACCTGGAAAAACAATACATTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGGACAGGGATATCTCTCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATACGAAGTTTTTCAAGTGATCCAAAGAAAGCCTCTAATAAGTAATGAATCAGAAGGGAAGATGCCTAGCAAAATCAATGGTGACATTGACTTTCGAGATGTTCACTTTTCCTACCCATCACGGCCAGAGAAAGCAATCCTTCAAGGACTGACCCTGTCAATTCCAGCAGGAAAGACAATAGCACTAGTTGGTGGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTAGTTAGCAGATTCTATGACCCGTCAAGAGGAGAAATTTTTATTGATCGTCACAATATAAAGGATCTCGATCTGAAGTTCCTACGAAGAAATATAGGGGCTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAACGGACGCAGATGATCAAGAGATTCAGAAGGCAGCAATAATGTCAAATGCACACTCTTTCATAGCACAGCTGCCTAATCAGTACCTAACAGATGTAGGAGAAAGGGGTGTCCAATTATCGGGAGGCCAAAAACAGAGAATTGCAATAGCAAGAGCAGTTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAAGCCACTAGTGCTCTCGATTCAGAGTCTGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGAACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGTTGTAGTAGAGAATGGACAAGTTGCAGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTCAGCATGCAGAACCTTGAACCAGTTCCTGAATCAAGAAGTGCCCGCCAAGAAGATTTTCCTGATGAAACTAGACCACAAATAGAGGTGCAGGGAGAGGTCCAAATAAACATCACTGAGCATTCTGTGCTAAAGGAACAGGACAAAATAAGCAGTAGAGAAAGAAATATGTTTTTCAGAATTTGGTTTGATTTAAAAAAGAGGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTACATCATCACCATTGGAGTAGCATACTTTAATGAAGATGCAAAACGAGAAGTTGGAATTTTTTCAGCCATCTTCGCTGCAATAGGGTTGCTTTCGTTATTCAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGGCAAATCTCAGACGTTCTCTGTATTCAGGTGTGCTACGCAACGAAGTAGGCTGGTTTGACAAATCAGAGAATACAGTTGGTTCATTGACTTCACGCATTATCAGTGACACTGCTATGGTCAAAGTCATCATTGCTGATCGAATGTCGGTAATTCTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGGCTGTCAACTGGAGAATGGGTTTGGTAGCTTGGGCAGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAGGGATTTTCAGGTGACTACTCTGCTGCACATTCTAAGCTTGTTGCTCTAGCATCTGAGTCCACAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAACAAGTACTGAGGAAAGCCAAAACATCCCTTGAAATTCCAAAGAAAAGGTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCCATTGCTTTGTGGTACACAACAGTTCTGGTTGAGAGACGTCAAGCCACCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCTCTGCTATCAGTATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACCGAAATTGAACCAGACACACCAGATGACTCCCAACCTGAGAGGATCCAAGGAAATGTAGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGACCTGCATTCACTGTCCTTGACAATTTTAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTGCGATTTTATGATCCGCAGGCCGGAAAGGTATTAATTGATGGGAAAGACATACAGAAATATAATCTAAGATGGTTAAGGACACAAATAGGACTGGTACAACAAGAGCCACTGCTTTTTAATTGCTCAATTAGAGAGAATGTTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAACATACATGAATTTGTAAGTACTCTACCAAATGGGTATAACACTGTTGTTGGAGAGAAAGGCTGTCAGCTTTCCGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACATTACTAAAGAAACCTGCAATATTACTTTTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTAAATGCTTTAAGAGCAATACATCTGAAGGAAGACAGTGGCTTGTGTTCAAGAACCACCCAGATCACAGTAGCTCATAGGCTTTCCACAGTAATAAATTCAGATACTATAATTGTCATGGAAAAAGGTAAAGTTGTAGAGATGGGTTCCCACTCAACCCTGATAGCAGCAGAGGCAGGACTTTATTCAAGGATATTCAGGTTACAGAGCTTTGAAGAAACTTCATAG 3516 0.4135 MAPQKVVQTVDDTINEKDESSKKKDVVKTLSFFKLLSYADVVDWIMMGLGGLGSVVHGMAFPVGYLLLGKALNAFGNNINDIDAMVVALKKVVPYVWYMAIATFPAGILEISCWMYASERQLFRLRLAYLRVVLNQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSCCATFIAGIVIAAICCWEVTLLCLVVTISQIKTVYAFVGESSATKSFTENLEKQYIISKGEALVKGVGTGISLTYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNESEGKMPSKINGDIDFRDVHFSYPSRPEKAILQGLTLSIPAGKTIALVGGSGCGKSTVISLVSRFYDPSRGEIFIDRHNIKDLDLKFLRRNIGAVSQEPSLFAGTIKDNLKVGKTDADDQEIQKAAIMSNAHSFIAQLPNQYLTDVGERGVQLSGGQKQRIAIARAVLKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIVVVENGQVAETGTHQSLLDTSRFYSTLFSMQNLEPVPESRSARQEDFPDETRPQIEVQGEVQINITEHSVLKEQDKISSRERNMFFRIWFDLKKRELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFNEDAKREVGIFSAIFAAIGLLSLFSHTFQHYFFGVVGEKAMANLRRSLYSGVLRNEVGWFDKSENTVGSLTSRIISDTAMVKVIIADRMSVILQCVSSILIATVVSMAVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSAAHSKLVALASESTTNIRTIASFCHEEQVLRKAKTSLEIPKKRYRKESIKYGIIQGFSLCLWNIAHAIALWYTTVLVERRQATFENGIRSYQIFSLTVPSITELYTLIPTVISAISILTPAFKTLDRKTEIEPDTPDDSQPERIQGNVEFENVKFNYPSRPAFTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQAGKVLIDGKDIQKYNLRWLRTQIGLVQQEPLLFNCSIRENVCYGNNGASESEIVEVAKEANIHEFVSTLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLFDEATSALDAESERIIVNALRAIHLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMEKGKVVEMGSHSTLIAAEAGLYSRIFRLQSFEETS 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0539 1171 Gene3D - 291 545 IPR027417 -
Aed10g0539 1171 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 293 529 IPR003439 GO:0005524
Aed10g0539 1171 Pfam ABC transporter 937 1086 IPR003439 GO:0005524
Aed10g0539 1171 Gene3D ABC transporter type 1, transmembrane domain 245 885 IPR036640 GO:0005524|GO:0016021
Aed10g0539 1171 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 919 1163 IPR003439 GO:0005524
Aed10g0539 1171 ProSitePatterns ABC transporters family signature. 1058 1072 IPR017871 GO:0005524
Aed10g0539 1171 PANTHER BRACHYTIC2 18 200 - -
Aed10g0539 1171 PANTHER BRACHYTIC2 244 1168 - -
Aed10g0539 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 1165 IPR027417 -
Aed10g0539 1171 Pfam ABC transporter 311 460 IPR003439 GO:0005524
Aed10g0539 1171 SUPERFAMILY ABC transporter transmembrane region 592 905 IPR036640 GO:0005524|GO:0016021
Aed10g0539 1171 Gene3D ABC transporter type 1, transmembrane domain 27 203 IPR036640 GO:0005524|GO:0016021
Aed10g0539 1171 CDD ABC_MTABC3_MDL1_MDL2 293 530 - -
Aed10g0539 1171 Pfam ABC transporter transmembrane region 48 201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed10g0539 1171 Pfam ABC transporter transmembrane region 601 863 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed10g0539 1171 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 600 884 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed10g0539 1171 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 49 202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed10g0539 1171 SMART AAA_5 320 506 IPR003593 -
Aed10g0539 1171 SMART AAA_5 946 1140 IPR003593 -
Aed10g0539 1171 CDD ABC_MTABC3_MDL1_MDL2 919 1165 - -
Aed10g0539 1171 SUPERFAMILY ABC transporter transmembrane region 35 237 IPR036640 GO:0005524|GO:0016021
Aed10g0539 1171 CDD ABC_6TM_Pgp_ABCB1_D2_like 593 902 - -
Aed10g0539 1171 ProSitePatterns ABC transporters family signature. 432 446 IPR017871 GO:0005524
Aed10g0539 1171 Gene3D - 909 1170 IPR027417 -
Aed10g0539 1171 PANTHER ABC TRANSPORTER B FAMILY 18 200 - -
Aed10g0539 1171 PANTHER ABC TRANSPORTER B FAMILY 244 1168 - -
Aed10g0539 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 530 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0539 Aed-Chr10 4321942 4328367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0539 23 1170 Calmodulin-binding Proteins AT2G36910 39.065 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0539 K05658 - zju:107414909 1681.38