Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0512 ATGAGTGAGGTGGCGATGAGTGGAGAGAAGTCAGTGAGAATGGAAGATGTGGAGAGTGGGAGTGAGAGCAAGGGTGGTGGTGAATTGAAGGGGTTGATGAGGTGGGAGAAGTTCTTGCCCAAGATGATTCTCAGTGTGCTGTTGGTTGAAGCAGATGATTCCACAAGACAGATTATTACTGCGCTTCTCAGAAAATGCAGCTACAAAGAGATTATCTATTTTCTTACAGTGGCTGCCGTTCCCGATGGCTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGCACAAAGTTGATCTAATACTGACAGAAGTGGATTTGCCATCCATATCTGGTTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTTCAACAACTGTCATTAATGGCAGTCCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGACATTTGAGACAAAGGAGAAAGAGGAGAATAGACTAACTGATTGCTTTCTGTTGCAGAGCTCTTGTACAAAGCCTGACTTGGAAGCTGAGAGTTGCCCTGTCGATAACATGGGATTTTCTCCGCTGAAATGTGGGGAAGCATATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCTTTTGTTTAGGCCAGACATTCATGATGCATGATGCTGGAGGATCAAATGTGAGTATCCGCAAAAATGGTGGGGCAAGCACAACTAATGACATGGACACTGATCAAGAGCATTTTGGGAATGCTATTGCTAGCGTCAGTGGTGAGGCTCATGACAATCACTATGTTCAGATTAACTCTTCCAAGGAAGCCATTGACTTGATTGGAACATTTAATACTCATCCAAACTGCACCCTGAAAAATTCCATAGTTAATTGCACTGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCACCAGCTTTGCGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGTTTCAGCTTTCAAGCGGTATACTAACAGGCACTTGCAAATCTCGGCACCTGCAATGTTAATTAACTTCTCTGACCAACAAAGAGAACAGATAACAAATTGTGAGAAAAACATCTCACAAATTGCTTCTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATTGTGTCTCCAACTACAGTCCAATCAAAAGAATCTGAACTTGCAACCTCACACTCCCAGCAAGGGCATTCTATCCCAATTCCAGTAAAGGGTGTAAGGTTCTATGATCGATGCACAGCCTATGGTTCTGTACTTCCTTCAATGTTTCATACACAGTCAGGTTCACCAGCAATGCCAAATTCAAATTCAGTTGTGCTCCTTGAACCAAACTTTCAAGTAAATGCATTTTATCAGTCAAATATGAAGGAGAGTAATTCAGAGAAGCTTTATGAACCTCGTGGTCCAAATGGAAACAGCACCCAAAACCACATTGTGTACACACAGGAACACAAATCAGAACATGCAGAGGATCGAGGACATATCTCTCCCATAACTGATCAAAGCGTGTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGCTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGACAGCTTCAGAGGGCAAGCATGAAGACCTCACAAACAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAACGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCTAGAGTAAAAGGACAATTTGTTCGCCAAATGCTTCCTGATACTCTTGTTGCAGAAAAAGAATATGATCATTCACAGATTTCTGACTCACTGGAGAGGAGAGCATGA 2019 0.426 MSEVAMSGEKSVRMEDVESGSESKGGGELKGLMRWEKFLPKMILSVLLVEADDSTRQIITALLRKCSYKEIIYFLTVAAVPDGLKAWELLKGRPHKVDLILTEVDLPSISGYALLTLIMEHEICKNIPSTTVINGSPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQTFETKEKEENRLTDCFLLQSSCTKPDLEAESCPVDNMGFSPLKCGEAYPSGTETQQVETSFCLGQTFMMHDAGGSNVSIRKNGGASTTNDMDTDQEHFGNAIASVSGEAHDNHYVQINSSKEAIDLIGTFNTHPNCTLKNSIVNCTGKFDLSPQLDLSLRRSRPTSFANELTEERHTLMHSNVSAFKRYTNRHLQISAPAMLINFSDQQREQITNCEKNISQIASGCNSDSSTPSMQRCIVSPTTVQSKESELATSHSQQGHSIPIPVKGVRFYDRCTAYGSVLPSMFHTQSGSPAMPNSNSVVLLEPNFQVNAFYQSNMKESNSEKLYEPRGPNGNSTQNHIVYTQEHKSEHAEDRGHISPITDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWTASEGKHEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQMLPDTLVAEKEYDHSQISDSLERRA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0512 672 ProSiteProfiles Response regulatory domain profile. 45 184 IPR001789 GO:0000160
Aed10g0512 672 MobiDBLite consensus disorder prediction 9 28 - -
Aed10g0512 672 Pfam Response regulator receiver domain 46 149 IPR001789 GO:0000160
Aed10g0512 672 ProSiteProfiles CCT domain profile. 605 647 IPR010402 GO:0005515
Aed10g0512 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 134 IPR045279 GO:0009736
Aed10g0512 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 133 638 IPR045279 GO:0009736
Aed10g0512 672 Pfam CCT motif 605 647 IPR010402 GO:0005515
Aed10g0512 672 MobiDBLite consensus disorder prediction 1 28 - -
Aed10g0512 672 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 29 134 - -
Aed10g0512 672 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 133 638 - -
Aed10g0512 672 SUPERFAMILY CheY-like 45 128 IPR011006 -
Aed10g0512 672 Gene3D - 42 186 - -
Aed10g0512 672 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0512 Aed-Chr10 4156398 4161692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0512 600 648 Response Regulator Gene Family AT5G24470 83.673 2.23e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Aed10g0512 Response_reg 6.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0512 K12130 - gmx:100777119 1039.64