Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0503 ATGGATTCCGGCGTCCAGGGTTGCATCCTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCGCTGAGAAAATCAACGCTCTTTTGAAGGTCTCCAATGTCTGCGCCGAGTCCTACTGGCCCAGCCTTTTCGCCAAGCTCGCCCAGAATAAGAACATTGAGGATCTCATTTTGAACGCCGGTGGTGGTGGTGCCGCTGTTGCCGTTGCCGCTCCTGCTGCCGGTGGTGGTGCTGCCGCCGCAGCCGCACCCGCAGCCGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGTGATGATGACATGGGTTTCGGCTTGTTTGATTAG 330 0.5515 MDSGVQGCILATLILHDEEIPVTAEKINALLKVSNVCAESYWPSLFAKLAQNKNIEDLILNAGGGGAAVAVAAPAAGGGAAAAAAPAAEEKKEEVKEESDDDMGFGLFD 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0503 109 CDD Ribosomal_P1 6 61 - -
Aed10g0503 109 Hamap 50S ribosomal protein L12 [rpl12]. 6 109 IPR027534 GO:0003735|GO:0005840|GO:0006414
Aed10g0503 109 MobiDBLite consensus disorder prediction 82 109 - -
Aed10g0503 109 MobiDBLite consensus disorder prediction 87 103 - -
Aed10g0503 109 Pfam 60s Acidic ribosomal protein 22 108 - -
Aed10g0503 109 Gene3D - 5 63 IPR038716 -
Aed10g0503 109 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 109 - -
Aed10g0503 109 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0503 Aed-Chr10 4126303 4128651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0503 1 109 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.786 1.32e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0503 K02942 - gmx:100801741 142.895