Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0501 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTGGGCAACCTGCCCTCTGATATAAGAGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTCGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGGCGTGGACATGGAGGAGGAGGTGGCAGTGGCGGTGGTGGCGGAGGCAGTGGTGGAGGGCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGTAAAGCTGGTGATGTTTGCTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCCAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGCAGAAGTCCAAAAAGAGTTAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCGATCAGCATCACCAATCAAATCTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTAGTGGTTGAATTTCTGAAAAAGCTGGTGGTCTCTGGTGATATTGTCCCATTCTGGGTGCCTTGGGACTTGGGTAGATTTCAGGGGGGTCGGATCACCTTCCCCGATGTTGTTTCTTCGTAA 894 0.472 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGHGGGGGSGGGGGGSGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSRSPKRVRSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVVVEFLKKLVVSGDIVPFWVPWDLGRFQGGRITFPDVVSS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0501 297 MobiDBLite consensus disorder prediction 233 254 - -
Aed10g0501 297 MobiDBLite consensus disorder prediction 81 110 - -
Aed10g0501 297 Gene3D - 120 197 IPR012677 -
Aed10g0501 297 Gene3D - 2 119 IPR012677 -
Aed10g0501 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Aed10g0501 297 MobiDBLite consensus disorder prediction 218 232 - -
Aed10g0501 297 CDD RRM1_SF2_plant_like 8 79 - -
Aed10g0501 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Aed10g0501 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 184 IPR000504 GO:0003723
Aed10g0501 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 257 - -
Aed10g0501 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Aed10g0501 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 257 - -
Aed10g0501 297 SUPERFAMILY RNA-binding domain, RBD 6 190 IPR035979 GO:0003676
Aed10g0501 297 MobiDBLite consensus disorder prediction 197 254 - -
Aed10g0501 297 CDD RRM2_SF2_plant_like 120 195 - -
Aed10g0501 297 SMART rrm1_1 8 78 IPR000504 GO:0003723
Aed10g0501 297 SMART rrm1_1 121 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0501 Aed-Chr10 4110584 4115986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0501 6 204 Eukaryotic Initiation Factors Gene Family AT4G34110 23.671 1.45e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0501 K12890 - gmx:100800653 355.91