Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0500 ATGGCTGTGGCGGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAGAGTTTGGATAGCAGCAGCGGTGCAGTGTCAGCGGATTCGAGTGAGGTTGAGCAATCGAAAACCAGAAGCGATCAGACTCTGAACGGTGGCGGCGTTTTCAACCATCAACAGCACCAAGAGAGAGTTCCGGGTGCCATGTCAGTTCCTAACGGCAATTTCAGCTACAAGCCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATCAATGGGGTTATGAGTGGGGAGAATGGGGGTGACAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCTCCATCACTAGCCAATAATCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTATGGCAATACTAATGGCCAAGCTAACAACCGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGGAGAATGAATAATCACAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCACTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTTACAGATGAAGATGGTGCAAGGGCTGCCTTGAGCCTGTCTGGTACCATGCTTGGATATTATCCGCTGAGAGTGCTACCTTCGAAAACTGCCATTGCGCCTGTCAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACCCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGGTTCACCGCTTGAGGCTGCTTGGAGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGTGGTGTGATTCTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGTCCTCGTGCTCCTCGTCCCATCATGCACTGA 1131 0.4668 MAVAENVGAKIGSSSQSLDSSSGAVSADSSEVEQSKTRSDQTLNGGGVFNHQQHQERVPGAMSVPNGNFSYKPQMHANGVNNDGYGINGVMSGENGGDSFKRDMRDLEELLSKLNPMAEEFVPPSLANNHGFLAGPNAGFGYTNNFMLPNNYGNTNGQANNRRRKNGYNPGKRRMNNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPIMH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0500 376 MobiDBLite consensus disorder prediction 9 48 - -
Aed10g0500 376 CDD RRM1_CID8_like 189 268 IPR034823 -
Aed10g0500 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Aed10g0500 376 MobiDBLite consensus disorder prediction 1 48 - -
Aed10g0500 376 CDD RRM2_CID8_like 284 365 IPR034825 -
Aed10g0500 376 SMART rrm1_1 192 262 IPR000504 GO:0003723
Aed10g0500 376 SMART rrm1_1 289 360 IPR000504 GO:0003723
Aed10g0500 376 Gene3D - 275 370 IPR012677 -
Aed10g0500 376 Gene3D - 150 268 IPR012677 -
Aed10g0500 376 SUPERFAMILY RNA-binding domain, RBD 279 370 IPR035979 GO:0003676
Aed10g0500 376 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 376 - -
Aed10g0500 376 MobiDBLite consensus disorder prediction 153 176 - -
Aed10g0500 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 256 IPR000504 GO:0003723
Aed10g0500 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 357 IPR000504 GO:0003723
Aed10g0500 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 266 IPR000504 GO:0003723
Aed10g0500 376 SUPERFAMILY RNA-binding domain, RBD 151 264 IPR035979 GO:0003676
Aed10g0500 376 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 376 - -
Aed10g0500 376 Pfam Ataxin-2 C-terminal region 111 125 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0500 Aed-Chr10 4103280 4108711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0500 190 359 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 3.63e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0500 - - gmx:100787572 672.159