Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0499 ATGGCTGTTGCTGAGAATGTTGGCCCCAAAATCGGTTCTTCCAATCAAAATTTGGACAGCAGTGTAGGTGTAGTGTCTTCTGACTCTGGTGAGGTTGAAAAATCCAAACCCATAAATGGGTCAATCAACGGTGATCAGAAGCTGAACAACGGTGTCTTCAACCACCAAGATAGAGTTCATGGCACTATGTCAGTGCCCAATAACAATTATAACTACACGGCCCAAATGGGTCAGATGCACACAAATGGGGTGAACAGTGATGGGTATGGGATGAATGGGGTCAGGAGTGGGGAGGATAGGGGTGAGAGTTTCAAGCGTGACATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAGTTTGTGCCCCCATCACTAACCAATATTCATGGCTACCTGCCTGGACCTGGTGCCGGTGCCGGGTTTGGTTACCCTAATAATTTTATACTGCTCAATGGTTATGGTAATGCTAATGGTCAAACTAACCGAAGGAGGAAGAATGGCTATAATAATGGAAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAAATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGTTAGCGGCGCTCTTTCTTAACTGTGGCCAGGTGGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTTTGAGCCTGTCTGGAACCATGCTTGGATATTATCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCACCCGTTAATCCAACATTTTTGCCCAGGGTATCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTAGTTTGGGATTTGACCTTTTCTTATAATCTTGTTGCACGCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTTGTAGCTTTTCATGGAACTAGGCTTGTCCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACAGTGTTATCATTTGCAATAATTTTGTCCCTTGCTCCTGAAAACTTCTTCAATCTGTTTGTGATTCTTGTGGGTACTCTCATGTCAATAAATGCGTATGCTGTGTTTGATAGCAAAGGGCATGTTTATTTCCTTGTTGTTTGGAAATTAAAGGGAAGCCAATCTGTTAATGTACAACAACGTAGCCTTGTCTCTACTCGTGTGATTCTTGTGGTATGGTGCTTCAATGATCTTGTGGTTAAGAGATACATATCTGTGGATTCTCTTGCAACTGAAGCTGGTGAAGGAAAGCTGGTGAAGGATATGGCAAGACAATATCCATTTGCTCCATCTGAAAGATTTTCTATTGCCTCATTCTTTCAGGCTGAGAGTGCAATTGCAGCCCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTACGTTCGCGTGCTCCTCGTTCTCCTATGCACTGA 1572 0.43 MAVAENVGPKIGSSNQNLDSSVGVVSSDSGEVEKSKPINGSINGDQKLNNGVFNHQDRVHGTMSVPNNNYNYTAQMGQMHTNGVNSDGYGMNGVRSGEDRGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNIHGYLPGPGAGAGFGYPNNFILLNGYGNANGQTNRRRKNGYNNGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRVSEDEREMCSRTIYCTNIDKKVVWDLTFSYNLVARLLKPMSNTSLNLFVERFVAFHGTRLVQRLRLLGDYHHSTRIAFVEFTVLSFAIILSLAPENFFNLFVILVGTLMSINAYAVFDSKGHVYFLVVWKLKGSQSVNVQQRSLVSTRVILVVWCFNDLVVKRYISVDSLATEAGEGKLVKDMARQYPFAPSERFSIASFFQAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRSPMH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0499 523 MobiDBLite consensus disorder prediction 9 48 - -
Aed10g0499 523 CDD RRM1_CID8_like 193 272 IPR034823 -
Aed10g0499 523 SUPERFAMILY RNA-binding domain, RBD 195 308 IPR035979 GO:0003676
Aed10g0499 523 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 305 - -
Aed10g0499 523 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 471 523 - -
Aed10g0499 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 260 IPR000504 GO:0003723
Aed10g0499 523 Gene3D - 156 272 IPR012677 -
Aed10g0499 523 SMART rrm1_1 196 266 IPR000504 GO:0003723
Aed10g0499 523 MobiDBLite consensus disorder prediction 1 48 - -
Aed10g0499 523 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 305 - -
Aed10g0499 523 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 471 523 - -
Aed10g0499 523 Pfam Ataxin-2 C-terminal region 115 129 IPR009818 -
Aed10g0499 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0499 Aed-Chr10 4091521 4097357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0499 185 265 Eukaryotic Initiation Factors Gene Family AT1G34140 34.940 1.57e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0499 - - gmx:106794116 563.918