Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0498 ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACCTTACCAAACAAGCTTCTGATACAACCTATACTAAGATCTTTGTTGGAGGACTTGCCTGGGAGACCAAGAGAGACACTCTGAAACGCTATTTTGATCCTTTTGGTGAGATCTTAGAGGCTGTTGTCATCACTGACAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAACCCTTATCCTGTGATTGATGGAAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCCCAAAAGTTTGATCCATCTATAACAACAGGAAGGCAAAGATTCAGTAGCCCTTCATGGAATATGGCACCAATCCCATTGCAAGGCACATCCACTTATTATAATCAGCAGCACATACCCCACTATCCATTTCAGTATCCAACCTACAGGTATCATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAATTACAATAATGCATACGGTGGACAGCAGCTTCCACTCCGTTGGATTCCAGCATATTGCCAACCCTTTTATGGCCTTAGTAGGCAGTTTATTCCAGCAGCATATGTGAAAAAAGCACAAACCCCTGACATGTCACCTCAGGAGTTCACAGTTGTTGGCTTCTCAGAACCTATTTCAGTTTCTCCTTCAATTTCCAGCAATGCAGAATTAGCAGTCACTGGAACAGTACCTACAACAGGAGTGCTAGAATCTCCCCAAGAACAGAAGTCTTCAACTTAG 777 0.4311 MSQPRQNKMMSPNLTKQASDTTYTKIFVGGLAWETKRDTLKRYFDPFGEILEAVVITDRITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITTGRQRFSSPSWNMAPIPLQGTSTYYNQQHIPHYPFQYPTYRYHPGYPHPQDLYEMNYNNAYGGQQLPLRWIPAYCQPFYGLSRQFIPAAYVKKAQTPDMSPQEFTVVGFSEPISVSPSISSNAELAVTGTVPTTGVLESPQEQKSST 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0498 258 Gene3D - 1 114 IPR012677 -
Aed10g0498 258 SMART rrm1_1 25 97 IPR000504 GO:0003723
Aed10g0498 258 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 258 - -
Aed10g0498 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Aed10g0498 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 82 IPR000504 GO:0003723
Aed10g0498 258 PANTHER BOULE-RELATED 1 258 IPR037366 GO:0003729
Aed10g0498 258 SUPERFAMILY RNA-binding domain, RBD 8 99 IPR035979 GO:0003676
Aed10g0498 258 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0498 Aed-Chr10 4086151 4088794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0498 8 100 C2H2 Transcription Factor Family AT2G19380 38.710 2.48e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0498 - - gmx:100788634 461.455