Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0488 ATGGGGCATTGCTGCAGCAAAAACATCGCCGTCAACAACGAGACGGTACCCTCCGATCACGGCCCCAAGCCGCCGCATTACGCGCCGGCGGAGGCTGCGGCGTCTCCTCCGCCGGCGTCTGGGAGCTCGGTCTCCGCCGCCACGACGGGGAGGAACACGCCGGCGCAATCGTTTTCCATGAGTCCCTTCCCGAGCCCCCTCCCGGCGGGCGTGGCGCCTTCGCCGGCGAAGACGCCGGGAAGGAAGTTTCGGTGGCCTCTTCCGCCGCCCTCGCCGGCGAAGCCGATCATGGCGGCGCTTTTGCGGCGGCAGGGGAAGGCGAAGCCGAAGGAGGGGCCCATACCGGAGGAGCAAGGGGAGGGTGGCGGCGGCGGCGACGGAGAGAGGTCGCTCGATAAGAGCTTCGGTTATGGAAAGAATTTTGGGGCGAAGTTCGAGTTGGGGAAGGAAGTGGGTCGAGGGCATTTTGGTCACACGTGTTGGGCCAAGGGGAAGAAGGGTGACCTTAAGGGACAATCTGTTGCTGTGAAAATCATATCCAAAGTTAAGATGACTTCAGCAATTGCAATCGAAGATGTACGGAGGGAGGTGAAAATGTTGAAGGCTTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGCCAACAACGTTTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGAAGATACCCGGAGGATGACGCTAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCGTTTTGTCATCTTCAAGGAGTAGTTCATCGTGATCTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGAAGATGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGAACAACGCCTTAATGATATTGTTGGGAGTGCCTACTACGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTATGGAGTATTGGGGTTATATCATACATCTTGTTATGTGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATTTTCCGATCTGTCTTAAGAGCAAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTACTGAACAAGGACCACAGAAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAATGAAAAAAATCCTATTCCTTTAGATATTTTGATATACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGCAGCATTGAAGGCTCTTGCGAAAGCATTGACAGAAGACGAGCTAGTCTACCTTAGAGCGCAGTTTAACCTCTTGGAGCCTAAAGATGGCTGCATTTCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAGGAGTCAAGGGTCCATGAAATTTTTAATTTGATGGAGTCACTCTCCTATAAAAAAATGGACTTTGAAGAGTTTTGTGCCGCTGCGATCAGTGTATACCAGCTAGAAGTTCATCAAGAATGGGATAGAATTGCCACCACAGCTTTCGATTATTTCGAGGAGATAGGAAACCGAGTAATTTCAGTTGAGGAGTTGGCTCAGGAGATGAGTTTGGGTCCATCAGCCTACTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACAATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1800 0.475 MGHCCSKNIAVNNETVPSDHGPKPPHYAPAEAAASPPPASGSSVSAATTGRNTPAQSFSMSPFPSPLPAGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKEGPIPEEQGEGGGGGDGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGDLKGQSVAVKIISKVKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDANNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKEDDAVMKVIDFGLSDFVRPEQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNPIPLDILIYKLVKSYVRASPLRRAALKALAKALTEDELVYLRAQFNLLEPKDGCISLENFRVALMKNATDAMKESRVHEIFNLMESLSYKKMDFEEFCAAAISVYQLEVHQEWDRIATTAFDYFEEIGNRVISVEELAQEMSLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0488 599 PANTHER CDPK-RELATED KINASE 3-LIKE ISOFORM X1 52 590 - -
Aed10g0488 599 ProSiteProfiles Protein kinase domain profile. 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0488 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Aed10g0488 599 Gene3D Phosphorylase Kinase; domain 1 139 234 - -
Aed10g0488 599 ProSitePatterns Protein kinases ATP-binding region signature. 151 177 IPR017441 GO:0005524
Aed10g0488 599 Gene3D - 446 514 - -
Aed10g0488 599 SUPERFAMILY EF-hand 439 584 IPR011992 -
Aed10g0488 599 MobiDBLite consensus disorder prediction 1 133 - -
Aed10g0488 599 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 590 - -
Aed10g0488 599 MobiDBLite consensus disorder prediction 38 63 - -
Aed10g0488 599 Gene3D - 426 555 - -
Aed10g0488 599 SMART serkin_6 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0488 599 Gene3D Transferase(Phosphotransferase) domain 1 235 425 - -
Aed10g0488 599 Pfam Protein kinase domain 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0488 599 CDD STKc_CAMK 144 406 - -
Aed10g0488 599 SUPERFAMILY Protein kinase-like (PK-like) 144 429 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0488 Aed-Chr10 4020368 4027332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0488 1 590 EF-hand Containing Proteins AT3G50530 57.994 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed10g0488 Pkinase 7.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0488 - - gmx:100794478 1066.22