Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0486 ATGATGGATGGAGATGATGAGAATATTCAAGCATCATCAAAGGGAAAAAATGTTGAAAGCTTCACATGCTTGGAGGCACCAAGGAAGAAAAGCAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCTAGAGATCTTGGCCTGCAGCCTCGCCAAGTTGCCATATGGTTTCAAAACAGAAGGGCTAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGAAAACTCAAAGATGAATATGACAATTTGGCATCAAAGTTTGAGTCCCTAAAGAAAGAGAAGGACTCTTTGCAATTAGAGTTGCAGAAGCTAAGTGATTTGGTGGTGACATCTCAAGAGGGTGGAAGGGAAGACAAGGGTGGCAAAGAAAACAGCGTAGAAGACGGTGGCTCTGGCAGTGGATACAGCTTTTGGAAGCCTGAAGCAAAACCAAGGTATTCAGATGATCAAAATGAGAACAGCATCATAAGGGGTGGTGAGAAATCTGAGGAAAAAGAACACCAACTTGTCAAAATGGATGATGATGATCATGATCATGCAGAGATGCCATTGGCATCACTTGAGAAATGGTATAGTGGTGTGGACCCTAGTGGCATCTTGGACAACTCATGTAGCAGTTCTCCATGGCTAGATTTCTGGACTTGA 717 0.4226 MMDGDDENIQASSKGKNVESFTCLEAPRKKSKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFESLKKEKDSLQLELQKLSDLVVTSQEGGREDKGGKENSVEDGGSGSGYSFWKPEAKPRYSDDQNENSIIRGGEKSEEKEHQLVKMDDDDHDHAEMPLASLEKWYSGVDPSGILDNSCSSSPWLDFWT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0486 238 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Aed10g0486 238 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Aed10g0486 238 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Aed10g0486 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 238 IPR045224 GO:0003700
Aed10g0486 238 SMART HOX_1 34 95 IPR001356 GO:0003677
Aed10g0486 238 Pfam Homeodomain 37 89 IPR001356 GO:0003677
Aed10g0486 238 Pfam Homeobox associated leucine zipper 91 131 IPR003106 GO:0006355|GO:0043565
Aed10g0486 238 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 6 238 - -
Aed10g0486 238 Gene3D - 26 100 - -
Aed10g0486 238 CDD homeodomain 37 92 IPR001356 GO:0003677
Aed10g0486 238 SUPERFAMILY Homeodomain-like 26 91 IPR009057 -
Aed10g0486 238 Coils Coil 83 131 - -
Aed10g0486 238 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Aed10g0486 238 MobiDBLite consensus disorder prediction 134 205 - -
Aed10g0486 238 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0486 Aed-Chr10 3998897 4000697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0486 18 238 Homeobox Transcription Factor Family AT2G46680 42.169 1.55e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed10g0486 Homeodomain 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0486 K09338 - gmx:100793260 425.631