Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0478 ATGGGAAGTTCATCGGAGACGAAGTTGCTGCAAGACCTTCTGTTGTACGCGGCGAGCGCGGCGCTGAGTTGTTTGGTTTTGTTTGCGGGGCTGAGACACCTGGACCCTAATCGCGAAGCATCCAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCAAAGCGTCTCGGTCGACCCCTCATTCAGACTAACCCTTACGAGGATGTTATAGCCTGTGATGTTATAAATCCTGATCACATTGATGTGGAGTTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTTCCTCTAAAAAGACCAGACTTGTTTTCACATGGTAAGCTTCTTGGACCACAAAAGGGAGTCCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCGGGAGCAGTTTTCATTAACGTCAGAATATCAAACCTCATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTTCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTGGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTCATGGCTCTCTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTCCTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGAGTTGAAGACAAAATAGACTTTGGTTATATAGCTGGCTTGTGTGAGGGCTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCAATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACGATCTCCTGGACCTAGACCGTTGTCCCAGTTAGATTTGGAGATGGCTCTTGCTACTTCACAGAAGACAAAGGTTGCTGCAAGTGAATATGGTGGATTCAGTCAGTCATCTTCAAGATGGACAGTGCCTGGTGAGTCAGGTGATTCTCAGTTTGAAGCTGCAATCAGTGAAATCTCTAAGCTTGTGCTTTCTCACATGATTAATCTCCAACCAAATTCCCAGGATCCTTAA 1176 0.4439 MGSSSETKLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERTEILKVILKGERVEDKIDFGYIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPGPRPLSQLDLEMALATSQKTKVAASEYGGFSQSSSRWTVPGESGDSQFEAAISEISKLVLSHMINLQPNSQDP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0478 391 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 349 - -
Aed10g0478 391 CDD AAA 116 251 - -
Aed10g0478 391 Pfam AAA+ lid domain 275 310 IPR041569 -
Aed10g0478 391 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Aed10g0478 391 Gene3D - 80 337 IPR027417 -
Aed10g0478 391 SMART AAA_5 118 254 IPR003593 -
Aed10g0478 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Aed10g0478 391 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 349 - -
Aed10g0478 391 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Aed10g0478 391 Gene3D - 253 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0478 Aed-Chr10 3947340 3951970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0478 39 318 Calmodulin-binding Proteins AT3G56690 32.042 3.12e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0478 K22530 - gmx:100796908 718.768