Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0472 ATGGCGAACGAATTATTAGCTCGTGCCTCACATGCCCCAACATCTGAGTTACTTTCCCGGACCATCTTTACTGTGTTCGACACTGTCAAAGCAGCCAATGAGGTTGTCGTTCAGAAGGAAAATTTTAAGAGATTTTCTATTCACTTGGAGAATGTCTCATTTATATTGAAGTCTTTATCAAAGGAAGACATACACAATCCCGAGAGCTTGGAAAATGCTATGAATGGTCTCAACCGAGAGGTTGGTGTGGCTAAGCAGCTTTTTGTTCAGTGCAGAAGTAGAAGTAAGGTTTATCTTTTAATCAATTCCAAAATGATTGTTACACGCTTGAATTGTTGTACGAAGGATATCGGTCGTGCAATAAGCCTCATTCCTTTGGCCTCTTCAGACATTAACTCTGGTTTAAATCAGCAGATAAGTGAGTTGTGTCAGGAAATGTTGTCTGCTGAGTATCAAACAGGTGCAGCAGAGGAGGAAATTTTGGAGAAAATTGAGACAGCAATACAAGATGGAAATGTTGATCGGTCGTACGCAAATCAGTTGCTAGCCTGCATTGCAGAGGTCATAAGAGTCCCCTTGGAGCATGGTGCATTGAAGAAAGAATTTGAAGAGCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGATAGATGTGTCAGAAGCTCTACATATGGAGCAGATTATTGCAGTGCTTGGAAAGGCTGATTTTATAACTTCAGCACAAGAGAAGGAAACTAGGTATTTTGAAAAGAGAAATTCCTTGGGAGAGAGACCATTGATGGCTCTTCAGTCTTTTTACTGTCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGACTTCTTCTGGGAAGACATTTGAGAGAAGGCAAATAGAGAAATGGTTTGCTGAAGGGAACACTCACTGTCCCATGACCAGGTTGCCTCTAGATACTAATATCCTACGGCCAAATAAAACTCTTAAACAGTCCATTCAAGAGTGGAAGGACAGGAACACAATGATTACTATTTCTGCCATCAAATCCAAACTTGAAACAAGTGATGAAGAGGGAGTGGTTCAATCCTTGGAAAAATTACAGGACCTATGCTTAGAAAGAGAGGTGCACCGAGAATGGTTAAGAATAGAGAATTACATTTCTGTTCTTATTGGACTTCTTAGTTCTAAAAACCGTGAAATAAGGAAGCGTGTTCTACTCATCCTTTCTATGCTTGCAATGGATAATGCAGACAACAAGGAAGATATTGCTAAAGTGGATAATGCACTTGGATTGATTGTTCGCTCACTTTCACGCCAAGTTGAGGAACGCAAGTTGGCATTGGAGTTGCTGTTGGAGTTATCTAAATGTAAAATGGTGTGCAGTCTCATAGGAAACATTCAAGGGAGTATACTTCTCCTGGTACCAATGTTAAATAGTGATGATGTTGAAGCAGCAAAAAATGCACATGAGTTGCTGGAGAACCTCTCTTTTCTTGATCAGAATGTTATAGAGATGGCAAAGGACAATTATCTCAAGCCTTTACTGATGAAACTTTCGGCAGGATCAGAAAGTATGAAAATAGTCATGAGTAAAACTTTGTCAGAAATTACATTAACCGACCAGAATAAATTGTCCTTAGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATGATGATGTGGAAATCAAGAAAGTGGCTGTCAAAGCTCTACTACAGCTCTCAAGCTTGCCAGAGAATGGCCTGCAGATGATTAAGGAAGGTGTTGCTCCACCACTGTTGGAACTGCTATACTGCCACAGTTTACAGTCCCCTACTCTGCTTGAACAGGTTGTTTCCACAATAATGCATCTTGCCATGTCAACAACTCACCAACAAGCTGAACCAGAACAGGTTTCAATGTTAGATTCCGAGGAAGACATATACAAATTCTTCTCTTTAATTTCTTTGACGGAACCTGAGATACAAAATAAGATTCTCAAAGCTTTGCAGGCATTGAGCCAATCTTTCTTTGGCTTCCGCATCAGAAATAGGTTGAGACAGATCTCAGCAGCTAAATTATTGGTACACTTGTTGTTGGAGCTTAATGCTGAAACAGTGCGGGTCAATGCCTTGAAGCTTTTCTGTTGCTTGACAGAAGACGGTGATTATGACAACATCTCATTACATATAACTGAAAGATTCATTAAAGTCTTGCTTACCATCATTGAGGCTTCTGATGTCGCAGAAGAGATGGTTACTGTAATGAGTATCATCTCTAAACTACCACAGGAGTCTCACATGACCCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTCTGACTTGTCTCACCGATCAACATAGGCATGCCTCACACAAAAAGCAAGTCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTTACTGTCTCAACAAATGTGGAGTGGCAGAAGAGAGTGGCTTTAGAAGGCATAATCCCAGTGCTGGTGCAATTGCTGCATTCTGGAACACCCTTTACAAAAAAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATATCGGTTGAGGGAGCCTATAAAGAAGCCTAGCATTTTCAAAAGCTGCTTTGTAGTCAAAGAAAGTGGTTGTCCAGCACACTTAGGCACCTGCTCAGTGGAGTCTTCATTCTGCATCTTGCAAGCTAATGCCTTGGACCCCCTTGTGCGCATGCTTGCAGAGCAAGACATTGAAACGCGTGAAGCTTCGTTAGACGCACTGCTAACTTTGGTTGATGGTGAAGCACCGCAGAGTGGAAGTAAGGTACTTGAAAATTCAAAAGCTATTGAGCCAACGATACGGCTATTAAGTGTTCCGATTCCCAGGCTGCAGGAAAAAATTCTAATAGCTTTAGAACGGATTTTTCAACTAGATGAAGTGAGAAATAAGAACAAAGTTGTGGCCACAACGTACTTGGTAGAGATAACTCAGGGGAAAGATAGCCGTTTGAGAAGTCTTGCTGCCAAGTGCCTAGCTCAATTGGGTGAACTTGATAAACAGTCCTCTTATTTTTAG 3027 0.41 MANELLARASHAPTSELLSRTIFTVFDTVKAANEVVVQKENFKRFSIHLENVSFILKSLSKEDIHNPESLENAMNGLNREVGVAKQLFVQCRSRSKVYLLINSKMIVTRLNCCTKDIGRAISLIPLASSDINSGLNQQISELCQEMLSAEYQTGAAEEEILEKIETAIQDGNVDRSYANQLLACIAEVIRVPLEHGALKKEFEELKNEMENAKSRIDVSEALHMEQIIAVLGKADFITSAQEKETRYFEKRNSLGERPLMALQSFYCPISLDIMVDPVETSSGKTFERRQIEKWFAEGNTHCPMTRLPLDTNILRPNKTLKQSIQEWKDRNTMITISAIKSKLETSDEEGVVQSLEKLQDLCLEREVHREWLRIENYISVLIGLLSSKNREIRKRVLLILSMLAMDNADNKEDIAKVDNALGLIVRSLSRQVEERKLALELLLELSKCKMVCSLIGNIQGSILLLVPMLNSDDVEAAKNAHELLENLSFLDQNVIEMAKDNYLKPLLMKLSAGSESMKIVMSKTLSEITLTDQNKLSLVKDGALQPLLQLLLNDDVEIKKVAVKALLQLSSLPENGLQMIKEGVAPPLLELLYCHSLQSPTLLEQVVSTIMHLAMSTTHQQAEPEQVSMLDSEEDIYKFFSLISLTEPEIQNKILKALQALSQSFFGFRIRNRLRQISAAKLLVHLLLELNAETVRVNALKLFCCLTEDGDYDNISLHITERFIKVLLTIIEASDVAEEMVTVMSIISKLPQESHMTQWLLDSGALKTILTCLTDQHRHASHKKQVIENSVQALCRFTVSTNVEWQKRVALEGIIPVLVQLLHSGTPFTKKNAAISIKQFSESSYRLREPIKKPSIFKSCFVVKESGCPAHLGTCSVESSFCILQANALDPLVRMLAEQDIETREASLDALLTLVDGEAPQSGSKVLENSKAIEPTIRLLSVPIPRLQEKILIALERIFQLDEVRNKNKVVATTYLVEITQGKDSRLRSLAAKCLAQLGELDKQSSYF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0472 1008 CDD RING-Ubox_PUB 265 306 IPR045210 -
Aed10g0472 1008 Gene3D - 863 1006 IPR011989 -
Aed10g0472 1008 SUPERFAMILY ARM repeat 785 1002 IPR016024 -
Aed10g0472 1008 SUPERFAMILY ARM repeat 335 621 IPR016024 -
Aed10g0472 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Aed10g0472 1008 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Aed10g0472 1008 Gene3D - 337 666 IPR011989 -
Aed10g0472 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 336 IPR013083 -
Aed10g0472 1008 SUPERFAMILY ARM repeat 532 857 IPR016024 -
Aed10g0472 1008 SUPERFAMILY RING/U-box 256 333 - -
Aed10g0472 1008 Coils Coil 195 222 - -
Aed10g0472 1008 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Aed10g0472 1008 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Aed10g0472 1008 Gene3D - 667 859 IPR011989 -
Aed10g0472 1008 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Aed10g0472 1008 SMART arm_5 753 799 IPR000225 GO:0005515
Aed10g0472 1008 SMART arm_5 531 571 IPR000225 GO:0005515
Aed10g0472 1008 SMART arm_5 802 842 IPR000225 GO:0005515
Aed10g0472 1008 SMART arm_5 572 615 IPR000225 GO:0005515
Aed10g0472 1008 SMART arm_5 876 916 IPR000225 GO:0005515
Aed10g0472 1008 SMART arm_5 920 960 IPR000225 GO:0005515
Aed10g0472 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1008 - -
Aed10g0472 1008 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0472 Aed-Chr10 3883367 3888319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0472 263 1008 U-box Gene Family AT1G76390 27.010 2.02e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0472 - - gmx:100818273 1674.83