Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0465 ATGGGTAGCTTCAGCGAAGACGAGGAATGTCGGTTTTTCGATGCACAAGAGGATGTTGTGTCCATTGCAGAGGATGAAGGGGTAGTATCATCCAATGCTTTAGATTATGAAATGTGGACTCGGAGTCTAAGCAGTGTGAGCGAGCGTAGGGGCAATTTTATGAAGAGGATGGGTCTGAGTAGTGTGGATTTGGTTGCTCTTGAGAATGAAATTGAAAATGAAAATTCCATAGATGAGGGTAGTGTTGATTGTGAAGAGGTGGTGATGGATAGAGTAAACGTTAACAGTGGTGCTGTGACCCGAAATTGTGCTATGGAAGAGGAATTCTGTTCAAGCAGAACAACAATGTCTTGTTGGCATAGTGAGAATTCTTCAGAGGGGTTTGGTTTAGTGGATAATAAAAACTCACCGTGTCAAGATGGAAATTTGGATCAGGAGGATAAGGAGATGAGTGAGGGAAGAGATCTGGATTCAGATCGGTTGGTGGTTGTGGAGGAACCTGAGGACTCAGAGCATGCCTTTACTCCCTCTAGGGAAACAGATGCTAATGTTCCTGTTGGGAGGATTAGTAAATGTAGAAAGGGTTGGTTAAGAAGATTGCGGTCGATTACGTGCATTCATAGGAAGGAGGAAGGTGATAATAAGGCGGGAGAAGGTCTTGGTGGTGAAGTGCCAGGATGTAGGCTTCAGAAAGTTAAGGTCCGGCAATCCAAGAAGCAAATGAAGGAGCTTTCGGCTCTTTACATGAGGCAAGATATCCAGGCGCACAAAGGTTCAATATTGACGATGAAGTTCAGTCCTGATGGCCAGTATCTTGCTAGTGGCGGTGAAGATGGGGTTGTGCGGTTGTGGCAGGTGGTTGAGGAGGATAGGTGTAATGAAGTTGACATTCCAGAAATTGATCCATCCTGCATTTATTTCACTGTGAATAATCTCTCTGAATTGACACCACTGTTTATGGATAAAGAAAAACTAAGCAAACTTAAGAGCCTGAAGAAAACATCAGATTCAGCTTGCATTGTTTTTCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCAGTGCACGAGTTTCGAGGGCACAGAGGTGATGTTCTAGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGAAAGTGAATCTTGACCATTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACGAGCATACAATTCAATCCCGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTTCTGATTGTCATGTTGTTGATTGGATTGATATCAAAGATATCGTGACTGCAGTATGCTATCGGCCTAATGGGAAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGGTTTTACAATGCATTAGAGAATAGCTTGCAATTAGATTCCCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGCATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACGAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGCAGCCCAATGTGTGCATCATTTACTTCTGATGGGAAACATATTCTATCAGCATGTGAAGACTCTAACGTATACCTATGGAATGTTAATCAGGAAGAGTCTAATCCTGGGAAAACTAAGAAGATTACGTCTTGTGAGCGGTTTTTCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTCAAAAGATTGAAATTGAACATCAACTGGACGTCCTGGATAAAAGACCGTTCCAAGTTATAAAACTCAGACCACCTGCTGCGTTCTCTCTGAGTCAAGAGTTCTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACTTGGCCAGAGGAGAAGCTTCCAGTTTCAAGCTCCAAGGGTAAAACATCGGTGATGCGTAAATCCGAATACAAGTTCTTGAAATCTTCCTGCAAGGGCACCTCCTCTGCTCATGCGTGGGGTATGGTCATCGTCACTGCTGGCTGGGATGGCAGGATAAAATCATTCCACAATTATGGGCTACCTATACCGGCTTGA 2124 0.4313 MGSFSEDEECRFFDAQEDVVSIAEDEGVVSSNALDYEMWTRSLSSVSERRGNFMKRMGLSSVDLVALENEIENENSIDEGSVDCEEVVMDRVNVNSGAVTRNCAMEEEFCSSRTTMSCWHSENSSEGFGLVDNKNSPCQDGNLDQEDKEMSEGRDLDSDRLVVVEEPEDSEHAFTPSRETDANVPVGRISKCRKGWLRRLRSITCIHRKEEGDNKAGEGLGGEVPGCRLQKVKVRQSKKQMKELSALYMRQDIQAHKGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKLSKLKSLKKTSDSACIVFPPKIFRLLEKPVHEFRGHRGDVLDLSWSNNNYLLSSSVDKTVRLWKVNLDHCLKVFSHSNYVTSIQFNPVDDNYFISGSIDGKVRIWAISDCHVVDWIDIKDIVTAVCYRPNGKGGIIGSLAGNCRFYNALENSLQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVSCADSRVRILDGLNVIGKYKSLSTGSPMCASFTSDGKHILSACEDSNVYLWNVNQEESNPGKTKKITSCERFFSNASVAVPWHGLKSQKIEIEHQLDVLDKRPFQVIKLRPPAAFSLSQEFFLESFPKGSATWPEEKLPVSSSKGKTSVMRKSEYKFLKSSCKGTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0465 707 MobiDBLite consensus disorder prediction 141 160 - -
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 286 IPR001680 GO:0005515
Aed10g0465 707 Gene3D - 350 488 IPR015943 GO:0005515
Aed10g0465 707 MobiDBLite consensus disorder prediction 125 140 - -
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Aed10g0465 707 MobiDBLite consensus disorder prediction 125 160 - -
Aed10g0465 707 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Aed10g0465 707 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Aed10g0465 707 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Aed10g0465 707 SUPERFAMILY WD40 repeat-like 248 697 IPR036322 GO:0005515
Aed10g0465 707 PANTHER WD REPEAT DOMAIN 44 6 706 IPR040324 -
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 429 IPR001680 GO:0005515
Aed10g0465 707 ProSitePatterns Trp-Asp (WD) repeats signature. 550 564 IPR019775 -
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Aed10g0465 707 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 706 - -
Aed10g0465 707 Gene3D - 234 349 IPR015943 GO:0005515
Aed10g0465 707 SMART WD40_4 482 522 IPR001680 GO:0005515
Aed10g0465 707 SMART WD40_4 350 388 IPR001680 GO:0005515
Aed10g0465 707 SMART WD40_4 432 471 IPR001680 GO:0005515
Aed10g0465 707 SMART WD40_4 246 285 IPR001680 GO:0005515
Aed10g0465 707 SMART WD40_4 523 563 IPR001680 GO:0005515
Aed10g0465 707 SMART WD40_4 391 430 IPR001680 GO:0005515
Aed10g0465 707 Gene3D - 489 700 IPR015943 GO:0005515
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 429 - -
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 397 IPR001680 GO:0005515
Aed10g0465 707 Pfam WD domain, G-beta repeat 394 429 IPR001680 GO:0005515
Aed10g0465 707 Pfam WD domain, G-beta repeat 254 284 IPR001680 GO:0005515
Aed10g0465 707 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Aed10g0465 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 572 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0465 Aed-Chr10 3819063 3825694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0465 253 421 U-box Gene Family AT2G33340 23.858 7.53e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0465 - - gmx:100817209 1193.33