Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0461 ATGGTTCTTTCTGGTGTAGGATCCAGAACCATGACGTTGCACGTTCCTGTTTTGCCACGTGTGAATCTATCTCCCACCAAAACTCAACAACACAACAACTCTCTCAAGTCTGAACTGAACTCTATGATGGCCCTGTCAAGTCCACACATAGAAAGATTCCTCTTATGCAAGCTTCATAGCCGCTGCTCCACCGCCAAGAACACACAAAGAAACAGCTTTACCACCACAACTAGGAGCAGGTGCTGTTCTGCCATAGCCATTGATGCTCCATCTTCTTTGACAGAGGTGCCTGGTATAAGATGGGGGTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGATATCATTGTTCGACCTGAGGGCCTTCAGGGCTTCTCTTTCGCAGCTGTCTTTGATGGCCATGGAGGCTTTTCTTCCGTCGAGTTCCTCAGGGATGAGCTCTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTGTTAGTTGAGAAAGATTTAAAAGCCATTAAAGGGGCATTGCAGGAGGCATTTCTCAAAGCTGACATGAAGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACAGCGACTGCTGTGTTTATCGGAGACAATGAGCTGCTAATTTCACATATTGGCGACTCATCTGCGGTATGTTCTTGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCCCACCGTCCATATGGGAGCAACAAGGCTTCTCTTGATGAAATTAGAAGAATCAGAGAAGCAGGTGGATGGATTAGCAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAATTTATTGCTCGTGTACAGTTCAACAATGACTTGGTTGTTGCATACCCTGATATTTATCAAGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCTGACGGCTTATGGGATTACGTGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGGTCAACTACGAAAACATGGAAACATTCAGCTAGCATGTGAAGCGCTTGCAGAAGCCGCTTTGGACCGACGTACGCAGGATAATGTCAGCATTATAATTGCCGATTTAGGGAGGACAGACTGGCAGAATGCGCCACCGGTGAAACAAAATACTGTACTTGAGCTAGTCCAAGCTCTTGCTACCATTGGAATTGTGTCCATTGGAATCTGGTTTTCATCACAGTTTTCTTTATAG 1281 0.4536 MVLSGVGSRTMTLHVPVLPRVNLSPTKTQQHNNSLKSELNSMMALSSPHIERFLLCKLHSRCSTAKNTQRNSFTTTTRSRCCSAIAIDAPSSLTEVPGIRWGSIALQGLREEMEDDIIVRPEGLQGFSFAAVFDGHGGFSSVEFLRDELYKECVEALQGGLLLVEKDLKAIKGALQEAFLKADMKLEMNGEEDESGATATAVFIGDNELLISHIGDSSAVCSCRSGKAEVLTSPHRPYGSNKASLDEIRRIREAGGWISNGRICGDIAVSRAFGDVRFKTKKNEMLQKGVQEGKWSAKFIARVQFNNDLVVAYPDIYQVALGSDAEFVVLASDGLWDYVSSSEAVSLVRGQLRKHGNIQLACEALAEAALDRRTQDNVSIIIADLGRTDWQNAPPVKQNTVLELVQALATIGIVSIGIWFSSQFSL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0461 426 Gene3D - 99 392 IPR036457 -
Aed10g0461 426 SUPERFAMILY PP2C-like 92 386 IPR036457 -
Aed10g0461 426 Pfam Protein phosphatase 2C 102 378 IPR001932 -
Aed10g0461 426 ProSiteProfiles PPM-type phosphatase domain profile. 100 385 IPR001932 -
Aed10g0461 426 PANTHER PROTEIN PHOSPHATASE 2C 47 422 IPR015655 GO:0004722|GO:0006470
Aed10g0461 426 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Aed10g0461 426 CDD PP2Cc 99 385 IPR001932 -
Aed10g0461 426 SMART PP2C_4 90 383 IPR001932 -
Aed10g0461 426 PANTHER PROTEIN PHOSPHATASE 2C 57 47 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0461 Aed-Chr10 3787550 3791468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0461 43 362 PP2C-type Phosphatase Gene Family AT4G27800 60.123 6.58e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0461 K04457 - gmx:100784071 649.432