Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0443 ATGGAGTACGGAAGGTTGGGACCCTCTGATCCTGGTGGCTCCTCGCTCCCCAGTGCTCCGAGATCTTCAGGGAGGAAGAAGATTGTGTTGCTGTCACTCCTCGGTGTCGTATTAATTGCAGCTTCTGCTGTTATTGCGGTTGCTGTCCGCTCTCGCATTAATAATAATACCAGAGCGGACGGGCCGAGGCTCGGGAAGCCCACTCTGGCAATTTCACGCACCTGCAGCAAGACGCGGTTCCGGTCGCTGTGCGTTAACTCATTGCTGGGCTTCCCGGGATCTGAGGCGGCGTCCGAGAAGGACCTCGTCCACATTTCCTTCAACGTGACGCTGCAGCACTTCTCCAAGGCGTTGTACTCCTCCGCGTCCATGTCCTACGCTGCCATGGACCCTCGCGTCCGCGCTGCCTACGGCGACTGCCTCGAGCTCCTCGACGACTCCGTCGACGCGCTCGCCCGCTCCCTCAGCACTGTCTCGCTCGGCGCCGTCGGCTCTGCCAACGACGACGTGCTGACGTGGCTCAGCGCCGCGCTCACCAACCAGGACACCTGCTCGGAGGGCTTCGCGGACGCCGCCGGCCCCGTGAAGGACCAGATGGCCAACAACCTCAAGGACCTGTCGGAGCTCGTGAGCAATTGTCTCGCGATATTCTCCGGCGCCGGCGCCGGCGACGACTTTGCTGGCGTTCCTATTCAGAATAAGAGGCGGTTAATGGCAATGCGAGACGATAATTTCCCGAGATGGTTGAATCGCCGAGATAGGAAATTGTTGAGCTTGCCTCTGTCGCAGATACAAGCCGATATTGTGGTTTCCAAGGACGGTAACGGAACCGTTAAGACCATCGCCGAAGCCATTAAGAAGGTGCCGGAATATAGTTCACGCCGCATCATTATCTACGTCATGGCAGGAAGGTATGAAGAGGACAATTTAAAGTTGGGGAGGAAGAAAATAAATGTGATGTTCATGGGGGACGGGAAGGGCAAGACCGTCATTACGGGCGGAAAAAATTATTACCAGAACCTCACCACATTTCACACCGCGTCCTTCGCTGCTAGTGGTTCTGGTTTCATCGCAAAAGACATGACGTTCGAGAACTACGCCGGGCCGGGGAGGCACCAGGCGGTGGCCCTCCGTGTCGGATCGGACCACGCGGTGGTGTACCGCTGCAACGTCATCGGATACCAAGACACAATGTATGTCCACTCCAACCGTCAGTTTTACAGAGAATGCGACATTTACGGAACCGTTGACTTCATATTCGGCAACGCCGCAGTGGTGTTCCAGAACTGCACCCTCTGGGCCCGAAAGCCCATGGATCAGCAGAAGAACACCATCACGGCCCAAAACCGAAAAGACCCGAATCAGAACACGGGCATTTCGATCCACAACTGTAGGATCATGGCCACGCCGGATCTCGAAGCATCCAAGGGTAGCTACGCCACTTTTCTGGGCCGTCCCTGGAAACTTTACGCTAGAACCGTCTACATGCTATCCAACATAGGAGATCACGTGCATCCACGTGGCTGGCTCGAGTGGAACACTTCGTCGTTTGCTTTAGACACGTGTTACTATGGCGAATACATGAATTATGGGCCGGGTGCAGCATTGGGCCAACGGGTTAAGTGGCCTGGGTACCGGGTCATCAATTCCACGGCGGAAGCGTCTCAATTCACGGTTGGCCAATTCATATCGGGCTCGTCATGGTTGCCCTCAACCGGAGTGTCATTCATTGCTGGGTTGTCAACCTGA 1749 0.5597 MEYGRLGPSDPGGSSLPSAPRSSGRKKIVLLSLLGVVLIAASAVIAVAVRSRINNNTRADGPRLGKPTLAISRTCSKTRFRSLCVNSLLGFPGSEAASEKDLVHISFNVTLQHFSKALYSSASMSYAAMDPRVRAAYGDCLELLDDSVDALARSLSTVSLGAVGSANDDVLTWLSAALTNQDTCSEGFADAAGPVKDQMANNLKDLSELVSNCLAIFSGAGAGDDFAGVPIQNKRRLMAMRDDNFPRWLNRRDRKLLSLPLSQIQADIVVSKDGNGTVKTIAEAIKKVPEYSSRRIIIYVMAGRYEEDNLKLGRKKINVMFMGDGKGKTVITGGKNYYQNLTTFHTASFAASGSGFIAKDMTFENYAGPGRHQAVALRVGSDHAVVYRCNVIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCTLWARKPMDQQKNTITAQNRKDPNQNTGISIHNCRIMATPDLEASKGSYATFLGRPWKLYARTVYMLSNIGDHVHPRGWLEWNTSSFALDTCYYGEYMNYGPGAALGQRVKWPGYRVINSTAEASQFTVGQFISGSSWLPSTGVSFIAGLST 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0443 582 PANTHER PECTINESTERASE 19 580 - -
Aed10g0443 582 Gene3D - 261 580 IPR012334 -
Aed10g0443 582 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Aed10g0443 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 219 IPR035513 -
Aed10g0443 582 CDD PMEI-like_3 75 218 - -
Aed10g0443 582 SMART PMEI_2 66 216 IPR006501 GO:0004857
Aed10g0443 582 SUPERFAMILY Pectin lyase-like 263 579 IPR011050 -
Aed10g0443 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 218 IPR035513 -
Aed10g0443 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 218 IPR006501 GO:0004857
Aed10g0443 582 MobiDBLite consensus disorder prediction 1 22 - -
Aed10g0443 582 Pfam Pectinesterase 267 565 IPR000070 GO:0030599|GO:0042545
Aed10g0443 582 Pfam Plant invertase/pectin methylesterase inhibitor 71 216 IPR006501 GO:0004857
Aed10g0443 582 PANTHER PECTINESTERASE 19 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0443 Aed-Chr10 3653759 3658693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0443 1 581 Carbohydrate Esterase AT3G49220 65.449 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0443 - - gmx:100808236 986.867