Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0439 ATGATTATCAAGCGGAATTTGAAATCCCAAATGCCGAGTCTGAAGCGGATCAAACTCGGTGACTCGGTGGGCGAGGACGACGAGTGTTCTTATGCTCGTAAGAAGAGAAAGACCAACGGATACTACCCTTTGAACCTTTTAGGTGACGTGGCCGCCGGCGTGATTCCGGTGAGCTTTCACGGGCTTCTCGGCGCCGGCGTGGCGGAGAAGGGGTTCTCTGCCGCGTGGTGCAACGGAGTTGAATCGAACGCGAAAAACGACGTTGTGGTCGTGGAAGTGAAGAAGAAGAGCGAGGTTCAGAGACCACCTCTGGTTAGAACCTCGAGGGGGCGAGTTCAAGTTCTGCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGCAAGAGTAGTAGTGGCTTGCGTGATTGTGATTATGACGAAGAATTTGAATGCAAGAAGGAGAAGTTCAGCTTCAAGGCACCCAAGGTTTGCAATAATCAGAAGAAAGGAAAGAACGAGGACAAAACTGGTTCTAAGGCTCCTAAGTACTCGGCATTGTGTAAGAGCTTTGAGAGGAGCGAGTGTTTGAGTTTGCGTGGTGGCGGTGCATTGGCGTTGCGGGGTGGTGGCGGCGTAGTGGTTGAAGAGGACGTGAAGGGAATGTTTTTTGAGGTGGAAGGGGTTGGAATGATGATGGGTTTGAAGGAGAATAGTGAAGAGAAGAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAAAAAGGAACCTTTTTGGCCAGCCATTGTTATTGATCCTATGACTCAGGCACCTGAGTTAGTTCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTAATGTTTCTTGGGTATGCGGGGAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGATTTTGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGCTTCTATAATCCTTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTAGTACCAATGCTTATGATGATTCTATTCTGAAAGCCTTTCAGGAGGTCAGTGGTTCAAACCAATATGCAGGATATCATTATCTGAACCAGGATTTATTTGATAAGAAAGAGACACGACCCTGTGAAGCCTGTGGGTTGAGTCTTCCTTACAAGATGTTAAAGAAAACAAAGGATTCAAGTCCTGGTGGCCAATCCCTATGTAGAACATGTGCTAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAGGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCAGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAGCAAAAACAATGGGCAGCTAGTGCTTCCAAATAGGGTCACTGTAGTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTACTGTGAAAGACTCCATGCTACCTCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTACTGCTCAGGTTCCTGCCAAACCTAAGAAACCTTCTCTAAAAGAAAGAAAGCAAAAGTTGCTTACCTTCTTGCAAGCAGCTTGCCATTCTGAATGTCAAATAGCAGTTCATCAAGAATGTTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGCGAAACACCTAACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCGACCGATGTTGACACATTATGGGTCCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAATGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATCTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGCAGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGAGCTCCCAATCCAGATACTGTTTTGATAATGCAAACCCCTCTCGGGGTTATTTCAACCAAAAGTCTTCTCCAAACTAAGAAAAAAACTGGTTCGAGGTTAATCTCATCTAACAGAAGAAAGCAAGATGACCCTCCTGTTGATAACACTGAGCATGAACCATTTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACAATACCAAAAAGAGAGCAGCAGATGAAGCCGTTTCTCATCAAGCGAGGGGTCACTATCGTCATCCGTTAGATGCAATAGAGAGTCTAAATGCACACAGAGTGGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATATCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCTCGTATAAATATTCAAGAAGGAGACATGGCTGATGAAGCAGTTTTAAAGTCATGCAAAGCCAGACAGAGCATGTCATATGCCTGCCCTTTTTTCTCTCGATTTGGTCCTGAGGATTCTTCTGGACTGGCTCCTCCTATCAATAATGAGCATGATTTTAATCCTAAGCAGGTTCTTGAATATCGTGGTGAACAAGTGCGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTACCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGGCTGATTAATCATTCCTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTCGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACTAACGTGGCTGCTGGTGATGAGTTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGAAGAAAACAAAGTCCCATGCCTATGTAAAGCTCCAAGCTGCCGTAAATTCATGAATTAG 3264 0.4412 MIIKRNLKSQMPSLKRIKLGDSVGEDDECSYARKKRKTNGYYPLNLLGDVAAGVIPVSFHGLLGAGVAEKGFSAAWCNGVESNAKNDVVVVEVKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSGLRDCDYDEEFECKKEKFSFKAPKVCNNQKKGKNEDKTGSKAPKYSALCKSFERSECLSLRGGGALALRGGGGVVVEEDVKGMFFEVEGVGMMMGLKENSEEKRNGLFGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFMDFVDRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAASTNAYDDSILKAFQEVSGSNQYAGYHYLNQDLFDKKETRPCEACGLSLPYKMLKKTKDSSPGGQSLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWSKNNGQLVLPNRVTVVCNGVEGIYFPSLHSVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSITVKDSMLPLEQWMLQLAEFHATAQVPAKPKKPSLKERKQKLLTFLQAACHSECQIAVHQECYGARNVRDFTSWVCKACETPNIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFANDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDDPPVDNTEHEPFSAARCRIFQRTNNTKKRAADEAVSHQARGHYRHPLDAIESLNAHRVVHEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARINIQEGDMADEAVLKSCKARQSMSYACPFFSRFGPEDSSGLAPPINNEHDFNPKQVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVAAGDELTYDYLFDPDEPEENKVPCLCKAPSCRKFMN 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0439 1087 CDD PHD_TCF19_like 443 493 - -
Aed10g0439 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 777 IPR013083 -
Aed10g0439 1087 CDD ePHD_ATX3_4_5_like 663 774 IPR041955 -
Aed10g0439 1087 ProSiteProfiles Extended PHD (ePHD) domain profile. 660 775 IPR034732 -
Aed10g0439 1087 SUPERFAMILY Tudor/PWWP/MBT 243 351 - -
Aed10g0439 1087 SMART PostSET_3 1071 1087 IPR003616 -
Aed10g0439 1087 Pfam SET domain 909 1061 IPR001214 GO:0005515
Aed10g0439 1087 SMART set_7 898 1068 IPR001214 GO:0005515
Aed10g0439 1087 SMART PHD_3 442 494 IPR001965 -
Aed10g0439 1087 SMART PHD_3 719 775 IPR001965 -
Aed10g0439 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 498 IPR013083 -
Aed10g0439 1087 Pfam PHD-finger 625 655 - -
Aed10g0439 1087 PANTHER PHD FINGER PROTEINS 1 623 - -
Aed10g0439 1087 PANTHER PHD FINGER PROTEINS 970 1087 - -
Aed10g0439 1087 ProSiteProfiles Zinc finger PHD-type profile. 440 496 IPR019787 -
Aed10g0439 1087 ProSiteProfiles SET domain profile. 898 1062 IPR001214 GO:0005515
Aed10g0439 1087 SUPERFAMILY FYVE/PHD zinc finger 440 497 IPR011011 -
Aed10g0439 1087 ProSiteProfiles PWWP domain profile. 250 319 IPR000313 -
Aed10g0439 1087 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1087 IPR025780 -
Aed10g0439 1087 MobiDBLite consensus disorder prediction 803 826 - -
Aed10g0439 1087 Gene3D SET domain 794 1087 IPR046341 -
Aed10g0439 1087 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 623 - -
Aed10g0439 1087 Pfam PWWP domain 251 345 IPR000313 -
Aed10g0439 1087 Pfam PHD-zinc-finger like domain 662 774 - -
Aed10g0439 1087 Pfam PHD-finger 442 495 IPR019787 -
Aed10g0439 1087 SUPERFAMILY SET domain 891 1084 IPR046341 -
Aed10g0439 1087 CDD SET_SETD1-like 885 1083 - -
Aed10g0439 1087 Gene3D - 245 351 - -
Aed10g0439 1087 PANTHER PHD FINGER PROTEINS 628 924 - -
Aed10g0439 1087 ProSiteProfiles Post-SET domain profile. 1071 1087 IPR003616 -
Aed10g0439 1087 MobiDBLite consensus disorder prediction 810 824 - -
Aed10g0439 1087 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 628 924 - -
Aed10g0439 1087 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 970 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0439 Aed-Chr10 3603482 3614108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0439 399 467 EF-hand Containing Proteins AT5G28340 50.725 4.53e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed10g0439 SET 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0439 - - gmx:100811337 1912.12