Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0436 ATGTCGTCGACGGTGCTGGAAGTGACGCGCGCAGCTCACGAGGAAGTGGAGCGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCTGCCTCGAACAAAGAGCGCTTGTATCAGAGTCACCGTGTTCGAAACATGATCGACACCATTTCCTCTACCACTGAAAAGCTTACTGGGATATATGAAGATGGCGACAATGCGAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCACTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTGAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGCGTTGTTGACGCCAATGACGATTATGAAGCACTTCTCAAGGAGGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGACTTGCATGAATTATACTATCAGTATGTCAATTCCAAGTTTGGAGAGCCAATTGAGTATTCTGCATTTGTTGATGTTTTCTCAGACACAAACAAGATTCCCCGCAAAATGAAAATGACCAGCTTAATACAACAATTTTTAGAAGCACTGACTGCATTGGGGCTTAAGACTGGTGGTACTGTTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCATTTTGCTAAGGGGGCACGTGGTGTAGAAAAGAACGGGGTTGCTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTATTGGAAGCCAAAATGATAAAACTTTGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAAGAAATGGAAGCAGAACGTGAGGAAGAAGAGACACAAGAGGACTCTGAAAGTGAAGATGATGAGCAGCAGATATATAATCCCCTTAAGTTACCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGCCAGGAATTTAAGTGTGAGATATGCGGGAACTACAGTTATTGGGGGCGTCGGGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAATGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTTAATAAGTGGCGGCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAACAAGAAGACATATGCTGACTTACAGCGCCAGGGACTGATATGA 1290 0.4403 MSSTVLEVTRAAHEEVERLERLIVKELQNEPASNKERLYQSHRVRNMIDTISSTTEKLTGIYEDGDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYEALLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPIEYSAFVDVFSDTNKIPRKMKMTSLIQQFLEALTALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGARGVEKNGVAAVPQEDGNSKEIALLEAKMIKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYADLQRQGLI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0436 429 PANTHER SPLICING FACTOR SF3A-RELATED 1 188 - -
Aed10g0436 429 Coils Coil 273 300 - -
Aed10g0436 429 MobiDBLite consensus disorder prediction 281 302 - -
Aed10g0436 429 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Aed10g0436 429 PANTHER BNAA03G01920D PROTEIN 1 188 - -
Aed10g0436 429 PANTHER BNAA03G01920D PROTEIN 184 429 - -
Aed10g0436 429 MobiDBLite consensus disorder prediction 283 302 - -
Aed10g0436 429 Pfam SF3a60/Prp9 C-terminal 310 429 IPR024598 GO:0000398|GO:0003723|GO:0005681
Aed10g0436 429 PANTHER SPLICING FACTOR SF3A-RELATED 184 429 - -
Aed10g0436 429 Pfam Replication stress response SDE2 C-terminal 186 224 - -
Aed10g0436 429 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Aed10g0436 429 ProSiteProfiles Zinc finger matrin-type profile. 334 365 IPR000690 GO:0003676|GO:0005634|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0436 1 429 C2H2 Transcription Factor Family AT5G06160 60.317 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0436 K12827 - cpap:110823248 674.855