Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0430 ATGAAGCATATAAATCAGAAACCGTACCCGGTTGAAGGGATGAGAGGATGGGGTGTTGACGGGATCAACATCTGCAGAGCATGGAGGGTTAGGGTTGATAACTTTGGCTCTTCGGCGATGCACTCCGATTCGATATGTGTCTCTTGTTTTTACCATTTCAGGAGTGGGCTATGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGAGGCTGCCTGCAGTCATGAATTTTCAGCAAGACAAATTTGTTAGATTTCGGGATTGGAATTCAGACAAGGGTTCCGAGAGCAACTCTCCTGCAATTCATGTGACACGCCCAGGGAGAATTAGGAATACACTAAATTCAGTCTCCGAGAAGTTTCAAAGGGGTTTTGAATCTAGTTCGGAGGGGATAAAGAGATTTAGAAAATCATTCAAATCTCTTCCCTATAACAGAGCTCTTTCTGGAAGTTTTAGTTCTGGAAATAAAATCCTTGATCCGCAGGGGCCTTTCCTTCAAAAGTGGAACAAGATATTTGTATTATCATGTCTTATTGCTGTGTCACTTGATCCTTTGTTCTTCTATGTCCCTGTGATTGATGATAGCATGAAATGTCTTTCAATGGACAAAAAAATGGAAATTACAGCAACTGTCTTAAGATCTTTCTCTGATATTTTTTACATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGATTGAAGATGCTTGGGCAATAGCAAAGCGGTATCTATCATCGTACTTCTTAATTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCATGTCGAAGAAATAATAGCATATGTGACCCAGCAGCTATGTATTGTGATAATCATAAAGGTTTGGGCACAATTTCAGAATTCCTGAATGCTTCTTGCCCAATTCAGGATCAAAATACAACCCTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGAAGTTGTGGAGTCAAGAGATTTCCCACAAAAGTTCTTTTATTGCTTTTGGTGGGGCCTAAGAAATTTGAGTTCTCTTGGTCAGAACCTTGTAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACCAGATTGGAGGAAATGAGGGTGAAAAGGAGAGATGCGGAACAATGGATGTCCCATCGACTACTCCCTGACAGCCTGAGAGAAAGAATCAGAAGACATGAACAGTACAAATGGCAAGAAACCAGAGGCGTTGATGAAGACAGTTTGATTCGAGATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGTCATCTTTGTCTGGCTTTGCTGATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTTTGGATGCAATGTGTGACCGACTCAAGCCAGTGCTATACACAGAAGAAAGCTGCATTGCCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGCGGCAAACTATTGACCGTGACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCCGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCACTAGATCCTCAATCCTCATCCAACCTCCCCATATCAACTAGGACTGTCCGAACTCTCTCAGAAGTGGAAGCATTCGCTCTAAAAGCAGACGACTTGAAGTTTGTTGCATCCCAGTTTCGGCGCCTTCATAGTAAGCAGCTTCGCCACACTTTCAGGTTTTATTCACAACAATGGCGCACGTGGGCTGCATGTTTCATACAGGCAGCGTGGAGGCGCTATAGTAAAAAGAAACTGGAAGAGTCTCTGAGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAAGCAGGTGGTAGTTCACCAAGTTTAGGTGCCACAATATATGCTTCAAGGTTTGCAGCTAATGCACTTAGACTTTTACGTAGAAATGGCACAAGGAAGACCAGAGTGCCAGAGAGAATATCACCCATGCTGCCGCAGAAGCCTGCTGAGCCTGATTTTACTTCTGAAGAGCAATAG 2166 0.4229 MKHINQKPYPVEGMRGWGVDGINICRAWRVRVDNFGSSAMHSDSICVSCFYHFRSGLCEILRFMKKLFTVLRLPAVMNFQQDKFVRFRDWNSDKGSESNSPAIHVTRPGRIRNTLNSVSEKFQRGFESSSEGIKRFRKSFKSLPYNRALSGSFSSGNKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDSMKCLSMDKKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLIEDAWAIAKRYLSSYFLIDILAVLPLPQVIGAFWYLFSIERETTCWQDACRRNNSICDPAAMYCDNHKGLGTISEFLNASCPIQDQNTTLFNFGIFLDALQSEVVESRDFPQKFFYCFWWGLRNLSSLGQNLVTSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDSLIRDLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESCIAREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPQSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNGTRKTRVPERISPMLPQKPAEPDFTSEEQ 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0430 721 Gene3D Helix hairpin bin 418 483 - -
Aed10g0430 721 Coils Coil 644 664 - -
Aed10g0430 721 SMART cnmp_10 492 623 IPR000595 -
Aed10g0430 721 CDD CAP_ED 492 623 IPR000595 -
Aed10g0430 721 Pfam Cyclic nucleotide-binding domain 513 603 IPR000595 -
Aed10g0430 721 MobiDBLite consensus disorder prediction 694 721 - -
Aed10g0430 721 SUPERFAMILY cAMP-binding domain-like 421 614 IPR018490 -
Aed10g0430 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 82 277 - -
Aed10g0430 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 276 719 - -
Aed10g0430 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 82 277 - -
Aed10g0430 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 276 719 - -
Aed10g0430 721 ProSiteProfiles cAMP/cGMP binding motif profile. 492 576 IPR000595 -
Aed10g0430 721 SUPERFAMILY Voltage-gated potassium channels 161 414 - -
Aed10g0430 721 Pfam Ion transport protein 277 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed10g0430 721 Gene3D Jelly Rolls 490 610 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0430 Aed-Chr10 3503091 3511539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0430 245 720 Ion Channels AT5G53130 80.544 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0430 K05391 - gmx:100815774 854.744