Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0420 ATGGACGATAATAGCTTATGCGATATTTTCGATGACAAAGAGTTTGGGTACTCCAGCGACCACTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTGGAATCGGACATCACCGATTTCCCTCCAATTATTAACGCTGTTGCTGTCTCCAAAGAGAATAACGAGGATGTTTCAACAAGATTGGTGTCCCAAAAGTCAACCTCCTCAAGTGCACCACTGGATTCCGAAACTGAGCCTGAAACATCACCCAAAACCAAGAGACAGAAGCTTAGTACTCCTACTACGCCAGAGGAAGGAAACCCAGATGGACAACAAAGGATCTCTCACATTACCGTTGAACGCAACAGGAGGAAGCAAATGAACGAACACTTGGCCGTCTTGAGGGGGAAGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTGCAAGCCCTGGAGGCGAAGAAGCAAAGAAAAGTGTACAGCGAAGTACTAAGCCCTAGGGTGGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTCGGAAGCCACCTCTGAGCCCAAGACTGAGCTTACCCATCAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGCAGCAGCAACAACAAGGCTACAACAACATCATTTGCAACTCTGTTCTCGACCCTTCTCCCACTTCTTCAGCCAACTCCTCCATCAACGACAACATCAATGAACTCGTTGCAAACTCCAAGTCCCACACTGCTGACGTGGAGGTCAAGTTTTCGGGTCCTCACGTTCTTCTCAAAACGGTGTCTCAGCGAATTCCAGGCCAGGCTCTCAAGATAATCACAGCCCTTGAAGATCTTTCGCTTGAAATCCTTCATGTCAACATTAACTGTGCTGCGGATGACACCATGCTAAACTCGTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1008 0.4831 MDDNSLCDIFDDKEFGYSSDHFGGDDLFAILESLESDITDFPPIINAVAVSKENNEDVSTRLVSQKSTSSSAPLDSETEPETSPKTKRQKLSTPTTPEEGNPDGQQRISHITVERNRRKQMNEHLAVLRGKGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRVVSSPRPSPLSPRKPPLSPRLSLPISPRTPQPGSPYRPRLQQQQQQGYNNIICNSVLDPSPTSSANSSINDNINELVANSKSHTADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLSLEILHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0420 335 MobiDBLite consensus disorder prediction 163 215 - -
Aed10g0420 335 MobiDBLite consensus disorder prediction 55 79 - -
Aed10g0420 335 PANTHER - 4 335 - -
Aed10g0420 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 173 IPR036638 GO:0046983
Aed10g0420 335 MobiDBLite consensus disorder prediction 55 108 - -
Aed10g0420 335 MobiDBLite consensus disorder prediction 87 108 - -
Aed10g0420 335 MobiDBLite consensus disorder prediction 176 205 - -
Aed10g0420 335 Gene3D - 103 167 IPR036638 GO:0046983
Aed10g0420 335 PANTHER TRANSCRIPTION FACTOR FAMA 4 335 IPR044283 GO:0003700|GO:0010052
Aed10g0420 335 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0420 Aed-Chr10 3400525 3403108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0420 8 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 48.315 1.14e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g0420 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0420 K20558 - gmx:100808130 495.738