Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0409 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAACATCTCCTTGTGTCCATCAATCTCTGCTCTGAACCAAGAAGGTCTCTCTTTACTTTCATGGCTTTCAACCTTCAACTCATCCAACTCTGCCTTCTCTTCCTGGGATCCAACACACAAAGATCCTTGTACATGGGACTACATAGCATGTTCCAAAGAAGGGTTTGTCTCAGAGATAATAGTAACATCCATTGATCTACGTAGCAGCTTCCCCTCACAGCTCCATTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACCGGTCATATTCCAAGTTCAGTGGGAAACTTGTCCTCTTTGGTCACTTTGGACCTTAGCTTCAATGCTTTAACAGGAAGCATTCCTGAAGAGATAGGAATGCTGTCCAAGCTGCAGTTGTTGTTGCTGAATTCAAATTCCTTGCAAGGTGGAATTCCAGCCACAATTGGAAACTGTTCAAGGCTTCAGCATGTGGCACTTTTTGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGTGCTCTTGAAACACTAAGAGCAGGTGGAAATCCAGGTATTCATGGTGAAATTCCAATGCAGATATCAGAGTGCAAGGCCCTTGTTTTTCTAGGACTCGCGGTTACCAGTGTTTCGGGGGAGATTCCACCAAGTATAGGAGAGCTTAAGAATCTGAAGACACTTTCAGTCTACACAGCACATCTCACAGGTCATATCCCAGCAGAGATTCAGAACTGTTCAGCCTTGGAGGATTTGTTTCTGTATGAGAACCAGCTTTCTGGAAGTATTCCTTATGAATTGGGCTCCATGCAAAGCCTCAAGAGGGTGTTACTGTGGCAGAACAATTTAACTGGAACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTTTGGGGGGTCAGATACCTGTGACTCTCAGTAGTCTACTCTTGTTGGAGGAGTTTCTTTTGTCTGATAATAATATTTATGGAGATATACCTTCCTATGTTGGAAACTTTTCCAGGCTGAAGCAAATTGAATTGGATAACAACAAATTCTCTGGGGAGATTCCACCTGTTATGGGGAAACTGAAGGAACTCACACTCTTCTATGCATGGCAGAATCAACTGAATGGAATTATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCACTTGATCTTTCACACAATTTCCTCACTGGCTCCATCCCAAGTTCACTATTTCATCTACGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGAACCATTCCTTCCTCATTAAAATTCCTACTTGGCCTTAATGTCTTGGATCTTTCTGCAAACAGAATAACCGGAAGCATTCCCGGGAATTTTGGCAAGCTTACATCTCTAAATAAGTTGATTCTGAGTGGAAACCTTATCTCTGGTGTGATCCCTGGGACACTGGGGCTGTGTAAGGCTTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCTGATGAGATTGGTTATTTGCAAGGATTAGATATCCTCTTGAACTTGAGCTGGAATTCTCTTACTGGTCCCATTCCAGATACCTTCTCAAATCTCTCAAAACTATCCATCTTGGATATCTCTCACAACAAGCTCACAGGTCTACTCACAGTTCTGGTTAATCTTGACAATCTTGTGTCTCTAAATGTCTCCTACAACAGCTTTTCTGGTTCTCTTCCCGACACAAAATTCTTCCGGGATCTACCTGCTGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATGCAAGTGAAAATGGCCAAGGCTTCAAGTCAATAAGAAATGTTATTATCTACACTTTCCTCGGGGTTGTTTTGGTTTCTATTTGTGTCACTTTTGGAGTAATTTTAACTCTCAGGATTCAAGGGGGAAACTTTGGGAGGAATTTTGATGAAGGTGGTGAAATGGAATGGGCTTTCACTCCATTCCAAAAACTCAACTTCTCCATCAATGAGATTTTGACAAAGCTGTCAGAATCAAACATTGTGGGAAAGGGTTGCTCAGGAGTCGTTTACCGTGTGGAGACTCCAATGAAGCAGATAATTGCAGTGAAGAAGCTATGGCCTATAAAGAAAGAAGAGCCACCAGAGAGAGATCTATTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACATAAGAATATAGTGAGACTTTTGGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTATTTGATTACATAAGCAATGGGAGTTTGTTCGGATTACTCCACGAAAATCGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAACAGCTCATGGTCTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCACAGAGACATTAAGGCTAACAACATCTTGGTAGGTTCACAATTTGAAGCTTTTCTTGCTGACTTTGGCCTTGCAAAACTTGTGAGTTCCTCAGACTCAGAGTGTTCAGGAGCCTCTCATACAGTTGCAGGTTCTTATGGATACATAGCTCCTGGTGAGTAA 2598 0.4169 MSSNALTLFILFLNISLCPSISALNQEGLSLLSWLSTFNSSNSAFSSWDPTHKDPCTWDYIACSKEGFVSEIIVTSIDLRSSFPSQLHSFGHLTTLVISNGNLTGHIPSSVGNLSSLVTLDLSFNALTGSIPEEIGMLSKLQLLLLNSNSLQGGIPATIGNCSRLQHVALFDNQLSGMIPGEIGQLSALETLRAGGNPGIHGEIPMQISECKALVFLGLAVTSVSGEIPPSIGELKNLKTLSVYTAHLTGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSMQSLKRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLGGQIPVTLSSLLLLEEFLLSDNNIYGDIPSYVGNFSRLKQIELDNNKFSGEIPPVMGKLKELTLFYAWQNQLNGIIPTELSNCEKLEALDLSHNFLTGSIPSSLFHLRNLTQLLLISNRLSGTIPSSLKFLLGLNVLDLSANRITGSIPGNFGKLTSLNKLILSGNLISGVIPGTLGLCKALQLLDISNNRITGSIPDEIGYLQGLDILLNLSWNSLTGPIPDTFSNLSKLSILDISHNKLTGLLTVLVNLDNLVSLNVSYNSFSGSLPDTKFFRDLPAAAFAGNPDLCISKCHASENGQGFKSIRNVIIYTFLGVVLVSICVTFGVILTLRIQGGNFGRNFDEGGEMEWAFTPFQKLNFSINEILTKLSESNIVGKGCSGVVYRVETPMKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYISNGSLFGLLHENRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDIKANNILVGSQFEAFLADFGLAKLVSSSDSECSGASHTVAGSYGYIAPGE 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0409 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Aed10g0409 865 SMART LRR_typ_2 138 162 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 114 137 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 403 427 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 283 307 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 451 474 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 548 570 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 571 604 IPR003591 -
Aed10g0409 865 SMART LRR_typ_2 475 498 IPR003591 -
Aed10g0409 865 Gene3D Ribonuclease Inhibitor 23 199 IPR032675 -
Aed10g0409 865 Pfam Leucine rich repeat 454 512 IPR001611 GO:0005515
Aed10g0409 865 Pfam Leucine rich repeat 530 583 IPR001611 GO:0005515
Aed10g0409 865 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Aed10g0409 865 ProSiteProfiles Protein kinase domain profile. 689 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0409 865 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Aed10g0409 865 Gene3D Ribonuclease Inhibitor 330 618 IPR032675 -
Aed10g0409 865 PANTHER LRR RECEPTOR-LIKE KINASE 438 863 - -
Aed10g0409 865 SUPERFAMILY Protein kinase-like (PK-like) 673 863 IPR011009 -
Aed10g0409 865 ProSiteProfiles Leucine-rich repeat profile. 405 427 IPR001611 GO:0005515
Aed10g0409 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 438 863 - -
Aed10g0409 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 446 - -
Aed10g0409 865 SUPERFAMILY L domain-like 276 613 - -
Aed10g0409 865 Pfam Protein kinase domain 691 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0409 865 Pfam Leucine Rich Repeat 405 427 IPR001611 GO:0005515
Aed10g0409 865 PRINTS Leucine-rich repeat signature 548 561 - -
Aed10g0409 865 PRINTS Leucine-rich repeat signature 406 419 - -
Aed10g0409 865 SUPERFAMILY RNI-like 79 393 - -
Aed10g0409 865 Gene3D Transferase(Phosphotransferase) domain 1 768 864 - -
Aed10g0409 865 PANTHER LRR RECEPTOR-LIKE KINASE 3 446 - -
Aed10g0409 865 Gene3D Ribonuclease Inhibitor 217 329 IPR032675 -
Aed10g0409 865 Gene3D Phosphorylase Kinase; domain 1 665 767 - -
Aed10g0409 865 SMART serkin_6 689 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0409 865 ProSitePatterns Protein kinases ATP-binding region signature. 695 723 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0409 Aed-Chr10 3299315 3302879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0409 23 863 Receptor kinase-like Gene Family AT5G56040 45.022 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed10g0409 Pkinase 7.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0409 - - gmx:100780101 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0409 10 3299315 3302879 Aed10g0409 10 3299315 3302879 ECH