Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0393 ATGTCGAGTACAGTAGGCAAAGTCATCAAATGCAAAGCTGCGGTTGCGTGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTAATCTGAAACCAGGGGACCATGCCCTCCCTGTGTTTACAGGGGAGTGTGGGGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCACGACAGCCAAACAAGATTCTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTCCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAGTCTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTAGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCAGCAAGAATTATTGGGGTTGATTTAGTTTCTAGCCGATTTGAAGAAGCTAAGAAGTTTGGTGTCAATGAATTTGTGAACCCAAAAGAACATGACAAGCCTGTACAACAGGTAATTGCTGAAATGACAAATGGGGGTGTGGATCGTGCAGTTGAATGTACTGGAAGCATCCAAGCCATGATCTCGGCATTCGAATGTGTACACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAATGAGAGGACTCTAAAGGGTACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGGTGCATCATTCGTATGGGCGAGTAA 1143 0.4628 MSSTVGKVIKCKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTNLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKVCVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGAARIIGVDLVSSRFEEAKKFGVNEFVNPKEHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0393 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Aed10g0393 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Aed10g0393 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Aed10g0393 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Aed10g0393 380 CDD alcohol_DH_plants 9 377 - -
Aed10g0393 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Aed10g0393 380 Gene3D - 183 321 - -
Aed10g0393 380 Gene3D - 19 370 - -
Aed10g0393 380 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Aed10g0393 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Aed10g0393 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0393 Aed-Chr10 3200650 3203710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0393 37 370 Monolignol Biosynthesis Gene Families AT1G72680 24.779 1.55e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0393 K18857 - gmx:100801918 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0393 10 3200650 3203710 Aed10g0393 10 3200650 3203710 ECH