Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0383 ATGGAGGATTCTTCAGCTGGTGAAGACACCAAGACTTGTCCACGTGGCCACTGGAGACCCGCTGAGGATGAAAAGCTCCGACAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATCGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGACCCGAGAATCAACAGAAGGCCATTCGCGGAAGAGGAAGAAGAGAGGTTACTCGCTGCTCATCGCATTCACGGGAACAAGTGGGCACTCATAGCGAGGCTTTTTCCCGGCCGAACCGATAATGCTGTGAAAAACCACTGGCACGTTATTATGGCTAGAAAGCAAAGGGAACATTCCAAGTTGTGTACTGCAGGGAAGAGAACTTTCCAAGACATCGTTTACAACAACGATTCCACCACCACTACCTCGTTCCTCCAAAAAAGAACATCACAATCTCCACACCATCATCATCAAGACCTATTGTTTAGTACGAGGTTTGGGTTGGAGAATGGAAGATTCTTTGATTTTCGAAGCAGCCTCGATAACAATAAGGATAGTAATAACAACAACAACAAGAATAGGATAGTGTCAGATACTCCTCCTCCTTCTAGTTCTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCACCACAAACGGTTGTTCTAGTACTGTAGTAGTGGATAGAAAAGGAGCCAGAGACTATTTCAACAGTACTACTTCTTGTTCTTCTACTAGTGTTTATCATCTCTCCGAATGTCCCAAAAGCTCAGATAGATCTTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCGCTTCCCAACTACAAGAGGGTTGTTCCAACTAGTCCTTTTAGTTTCCTTGGTTCTTCTGATCATCATGATGGTAGGATAATAAAGAGGGACTCGATGAGTTTCTGTGATAAAAATAATAATAATAATAATAATATTAACTCATCATCATCCACATTCACCACCAAGTTGAAGGCTTCCACGGAGAAAGTTCATCAGCAACAAACAAACAATGAAGATGAGACCAATATCGGGCCCAAAAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCGTAA 1113 0.4214 MEDSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFAEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREHSKLCTAGKRTFQDIVYNNDSTTTTSFLQKRTSQSPHHHHQDLLFSTRFGLENGRFFDFRSSLDNNKDSNNNNNKNRIVSDTPPPSSSSLASWNFASVPTTTTNGCSSTVVVDRKGARDYFNSTTSCSSTSVYHLSECPKSSDRSFLYRIYPNPAFSLPNYKRVVPTSPFSFLGSSDHHDGRIIKRDSMSFCDKNNNNNNNINSSSSTFTTKLKASTEKVHQQQTNNEDETNIGPKKEVPFIDFLGVGVSSS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0383 370 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Aed10g0383 370 MobiDBLite consensus disorder prediction 334 353 - -
Aed10g0383 370 MobiDBLite consensus disorder prediction 334 348 - -
Aed10g0383 370 Gene3D - 15 66 - -
Aed10g0383 370 MobiDBLite consensus disorder prediction 180 211 - -
Aed10g0383 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Aed10g0383 370 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Aed10g0383 370 SMART sant 66 114 IPR001005 -
Aed10g0383 370 SMART sant 14 63 IPR001005 -
Aed10g0383 370 PANTHER MYB PROTEIN-RELATED 6 368 - -
Aed10g0383 370 Gene3D - 68 132 - -
Aed10g0383 370 Pfam Myb-like DNA-binding domain 18 78 - -
Aed10g0383 370 MobiDBLite consensus disorder prediction 1 21 - -
Aed10g0383 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed10g0383 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed10g0383 370 CDD SANT 18 59 IPR001005 -
Aed10g0383 370 PANTHER TRANSCRIPTION FACTOR MYB56 6 368 - -
Aed10g0383 370 CDD SANT 78 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0383 Aed-Chr10 3109905 3111877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0383 12 126 MYB Transcription Factor Family AT1G17950 80.870 2.58e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g0383 Myb_DNA-bind_6 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0383 K09422 - gmx:100817328 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0383 10 3109905 3111877 Aed10g0383 10 3109905 3111877 ECH