Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0368 ACTTCTACAGCCTTCCTTAATTTTGTGCGATTCAAAATTCAGGGCGATGTCAGCAATTGCTTAATCTCGAAATTCTTAGATGATGAATTGCATGCAGCAATGGCTTCATCAAGAGATAATACAAAAGTTGTGCTAGTTGCTTGGTTGCTAGTAATGATTTCAGCAATGTCAAAAACAATTCATCCAAATCCTAGCTGCCAAAATAAATGTGGAAGTGTTAACATTCCGTACCCATTTGGCACAACTGAAGACTGCTACTTGAACATCAACTTTTATGTTGCTTGTAACACAAGTCACGACCCTCCCAAACCATTTCTGTGGAATGTCACAAAAAATATTGAGATCTTGGATGTGTCATTGAATGGCCATTTGAGGGTAAAATCCCCAGCAGCTTATGTCTGCTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAATTCATCTATGACTTTGCAAGCATTCCCCTTCTCATACACACATAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAACCATCAATGCAACAATTGGGAGAAACTACTCAGCTGGAGGGTGTTTTTCACTTTGTAGTAGTGTACAAAGTTCAGCCAATGGATCCTGGTTCGGCATTGGTTTCTGCCAAACCTCGATCCCAAAAAACATTTTGGCCTACCAAGCTCATGTCCTGAGATCAAATTTGATGCATGGGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGACTCTTTCAAGTTCTCCACTGATGACTTCATCAGACTTCAGAAGCGAAAAACTGCTCCCACGGTGCTTGATTGGGCTGTTGGGAATCAAACATGTGAAGAAGCTAAGAAGAATTTGACTAGTTTTGCCTGCCAACAAAATAGCGCGTGTGTTGACTCTGACAATGGACCAGGGTACCTTTGCAGATGTTTAGAAGGTTATGTGGGAAATGCATACCTTCATGGTGGATGCCAAGATATTGATGAGTGTGCCAATCCGAGTATAAATGACTGTTCTGATATTTGCATTAACCTACCTGGGAGCTATAATTGTTCTTGTCCCAAGAGTAAGAGGTATGAGGGAGATGGAAGAAAAGGAGGAAGTGGCTGTGTCTCGAATCTACAACATGTGGTTAATCAGATTGTCATAGGCACTGGCATAGGACTTATGCTGCTGTTAATTGTTAGTGGCTGGTTATACCATGTGTTCCGTAAAAGTAAAACGGTGAGACTCACAGCAAGATATTTCAAGCGAAACGGTGGCTTGATGTTACAGCAGCAAATTTCAAACATGGAAGGATCAACTGAGAGAGCCAAAATTTTCAGTGCAAGAGAGCTAAAGAAAGCCACTGAAAACTTTCACGAGAGCAGAATCATTGGCAGAGGAGGATACGGTACAGTTTACAAGGGAATACTTCAAAATGACCTAGTTGTTGCTATAAAGAAATCAAAACTAGTAGACCACGGCCAAATTGAACAATTCATCAACGAAGTGGTTGTGCTGTCCCAAATTAACCACAGAAACGTTGTGAAACTCCTAGCAGAATATGTGATTGGTGAAAGATCAGGTCTAACAGAAACAACAGACTATGCTAATTGTCATTATACTTGTGGTGGCCATGAGGATGACACCATTTGCAACGATGTGATGTCACCGTTATGGGATGGCAGATGA 1668 0.4113 TSTAFLNFVRFKIQGDVSNCLISKFLDDELHAAMASSRDNTKVVLVAWLLVMISAMSKTIHPNPSCQNKCGSVNIPYPFGTTEDCYLNINFYVACNTSHDPPKPFLWNVTKNIEILDVSLNGHLRVKSPAAYVCYDEKGVLVDSGNSSMTLQAFPFSYTHNKFIGIGCDTLSTINATIGRNYSAGGCFSLCSSVQSSANGSWFGIGFCQTSIPKNILAYQAHVLRSNLMHGDMNIPCSYSLLVEEDSFKFSTDDFIRLQKRKTAPTVLDWAVGNQTCEEAKKNLTSFACQQNSACVDSDNGPGYLCRCLEGYVGNAYLHGGCQDIDECANPSINDCSDICINLPGSYNCSCPKSKRYEGDGRKGGSGCVSNLQHVVNQIVIGTGIGLMLLLIVSGWLYHVFRKSKTVRLTARYFKRNGGLMLQQQISNMEGSTERAKIFSARELKKATENFHESRIIGRGGYGTVYKGILQNDLVVAIKKSKLVDHGQIEQFINEVVVLSQINHRNVVKLLAEYVIGERSGLTETTDYANCHYTCGGHEDDTICNDVMSPLWDGR 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0368 555 Pfam Protein kinase domain 451 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0368 555 Gene3D Phosphorylase Kinase; domain 1 422 522 - -
Aed10g0368 555 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 40 512 - -
Aed10g0368 555 CDD EGF_CA 324 352 - -
Aed10g0368 555 Gene3D Laminin 327 364 - -
Aed10g0368 555 ProSitePatterns Protein kinases ATP-binding region signature. 457 480 IPR017441 GO:0005524
Aed10g0368 555 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 40 512 IPR045274 GO:0007166
Aed10g0368 555 SUPERFAMILY EGF/Laminin 323 360 - -
Aed10g0368 555 SMART egf_5 327 369 IPR000742 -
Aed10g0368 555 SMART egf_5 276 323 IPR000742 -
Aed10g0368 555 Gene3D Laminin 274 326 - -
Aed10g0368 555 SMART egfca_6 324 369 IPR001881 GO:0005509
Aed10g0368 555 SUPERFAMILY Protein kinase-like (PK-like) 437 518 IPR011009 -
Aed10g0368 555 Pfam Wall-associated receptor kinase galacturonan-binding 66 125 IPR025287 GO:0030247
Aed10g0368 555 ProSitePatterns Calcium-binding EGF-like domain signature. 324 349 IPR018097 GO:0005509
Aed10g0368 555 ProSiteProfiles Protein kinase domain profile. 451 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0368 Aed-Chr10 2981537 2984465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0368 43 512 Receptor kinase-like Gene Family AT1G21230 38.144 8.13e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aed10g0368 Pkinase 1.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0368 - - gmx:100797492 890.952