Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0361 ATGGGGACTGAGGATGGAACAAGCGATGCTGATAAGACGGAATGTGATAAACGAGTTCAGTGTTTGAAAGGTGAAGCCATGAATGGTGGGGTGGCAATTGTGGATGGGAATGGTGTTTCTGAAGAGGGTCAGCTCTTGAAAAGTGAAGCCATGAATGATGGGGTGGCAATTGCTGATGCAAATGGTGTTGCTGGAGAGGGTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGTGGCAGTTGCAGATAAAGAGGACTCTGGTGGAGATGAATGTTTTCAAACTTATAAGAGGCGTAAGAGGTCAAATTCAAAAAGAAAAGTTCAGGAACAGTGCAGAGAAACCGTGGAATCTGCAACTCATATAGCAGATCAGGATGTGAAGAAACTGTGTGATATAGCTTTAGGCAATACTTCAGATGATTGTCCCCATGGACAGTGTGGAAATATTGTTCTAAAGCATTTATATCAGTCATTAGGTGGGGGCAATGGCGGCATAGAGGGGTGCATAAGGGAGGCACTTATTAATCATCCTAAACTTAATCATGCCACTACAGTTATGGAAAATTTTAAAACTGACAAAGATGGTCAAGAATGCTCTTTGCAATTTGAGCGGATTTCTCATAGAATAGGGAAGGAAGCTAATGGGCATGCAGATGTCATGTGTAATGGATGTTCTAGTGAATCACCTGACCATGGTGTGACTGAGACATGTCAGCGGGTGTTCTGTAATGTCTTAACTTCAGAAAAATTCAGTTCATTATGTAAGGCTTTGCTTGAAAATTTCCCAGGAATAAAGCCTGAAAGTGTATTTGACTTTACTGTCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCCCCAACACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTTATGAGATCGTTGCTCTTGCCAAGAGCCTCTCCAACTTGTCAAGAACTTCCTACTCTGAGTTGGTGGGAATTCCAGCACAGAGCACATTTCAAGATGAGAAGCAAGTGTTCAACAATCAGGAATCTGACTGTTGCATGAAACCAGAACAGACACAAGAATGTGCTATGCACAAGATTTGCAGTTGCAGGCGTTGTGGAGAGAAGGCAGATGGCACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTATCCTGTATTGAGCCTGCGGTGAAAGAAATAGCACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTGCTATGTGAAAGGTTAAATGATGTAAAGATCCCAGATGACGTAATTGGTGATGAAAGCTATCCTACAATTGAGGAAACACAAAATGAATTTGAAGAGAATTCAAATTGCACCTCTGATGGAATTCAAGTTTCCATAGGTGAGGAAAAAACACCTAATTGCAAGGTATGTGGAAATGAAGTGGATGGTGAAAAAATAAAAACATGTGGTCATCCGTTTTGCTCTAATAAATACTACCATGTAAGGTGTTTAACAAATAAGCAGTTGAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCCGGGTTTGCTTAGCTGATCGAGATGATGATCAAATTGTTCTGTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCGCAAACTTCTATCCCAAAAGGGAAATGGTTCTGCACAAAATGTGATGCTGGAATACAAGCAATCCGCCAGGCTAAAAAGGCATATGAGAGTAACAAGCTAAGAAGAAATGGCGAAGATGCTGCAAAGCCAAATGGTAATCTTGAAAAGAAACACAACAATAAACGTGTACGAGAACTGGAAAGTGGTGGAGCAATGGAAATGCTTTTAACTGCAGCCAACACTCTGCGTTTTGAAGAGAAAGAGGCGGCAAACCAGATCAAATCACAGAGAACATGA 1953 0.4142 MGTEDGTSDADKTECDKRVQCLKGEAMNGGVAIVDGNGVSEEGQLLKSEAMNDGVAIADANGVAGEGRVLKSEPFSNGVAVADKEDSGGDECFQTYKRRKRSNSKRKVQEQCRETVESATHIADQDVKKLCDIALGNTSDDCPHGQCGNIVLKHLYQSLGGGNGGIEGCIREALINHPKLNHATTVMENFKTDKDGQECSLQFERISHRIGKEANGHADVMCNGCSSESPDHGVTETCQRVFCNVLTSEKFSSLCKALLENFPGIKPESVFDFTVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGYEIVALAKSLSNLSRTSYSELVGIPAQSTFQDEKQVFNNQESDCCMKPEQTQECAMHKICSCRRCGEKADGTDCLVCDSCEEIYHVSCIEPAVKEIAPHKSWYCANCTANGIGSPHENCVLCERLNDVKIPDDVIGDESYPTIEETQNEFEENSNCTSDGIQVSIGEEKTPNCKVCGNEVDGEKIKTCGHPFCSNKYYHVRCLTNKQLKSYGHCWYCPSCLCRVCLADRDDDQIVLCDGCDHAYHIYCMKPPQTSIPKGKWFCTKCDAGIQAIRQAKKAYESNKLRRNGEDAAKPNGNLEKKHNNKRVRELESGGAMEMLLTAANTLRFEEKEAANQIKSQRT 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0361 650 ProSiteProfiles Zinc finger PHD-type profile. 526 576 IPR019787 -
Aed10g0361 650 Pfam PHD-finger 369 416 IPR019787 -
Aed10g0361 650 Pfam PHD-finger 529 574 IPR019787 -
Aed10g0361 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 579 IPR013083 -
Aed10g0361 650 ProSiteProfiles Zinc finger RING-type profile. 480 527 IPR001841 -
Aed10g0361 650 PANTHER D4, ISOFORM A 149 638 - -
Aed10g0361 650 SUPERFAMILY FYVE/PHD zinc finger 528 580 IPR011011 -
Aed10g0361 650 MobiDBLite consensus disorder prediction 591 618 - -
Aed10g0361 650 Gene3D - 266 418 - -
Aed10g0361 650 ProSiteProfiles Zinc finger PHD-type profile. 366 417 IPR019787 -
Aed10g0361 650 PANTHER HISTONE ACETYLTRANSFERASE 149 638 - -
Aed10g0361 650 SUPERFAMILY FYVE/PHD zinc finger 360 416 IPR011011 -
Aed10g0361 650 SMART PHD_3 368 415 IPR001965 -
Aed10g0361 650 SMART PHD_3 479 528 IPR001965 -
Aed10g0361 650 SMART PHD_3 529 574 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0361 Aed-Chr10 2923572 2929688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0361 528 596 C2H2 Transcription Factor Family AT3G01460 49.296 2.35e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed10g0361 PHD 1.4e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0361 - - gmx:100795906 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0361 10 2923572 2929688 Aed10g0361 10 2923572 2929688 ECH