Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0354 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGTATCCTCAAGAAGGCCAAAGAAATTAGTGTTCTTTGTGATGCACAAGTTTCCCTAATCATCTTTGGTGTCTCTGGGAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGATGTCCTGGACAGATACCAAAGAGCCTCTGGGAAAACCCTCTGGGATGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAGGACATTACGTCACTGAACTACAAGGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAATGGTGTCCGTGAGAAAAAGGCAATTTTTATAATATATATATATATATATACCATAGCTTCATTATTGGGCAAGATTTTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGCAACAACATTTGGCACTAGAAGGTGTGGGAAACATGCATGGACAATGGATTTGA 564 0.4167 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGVSGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVREKKAIFIIYIYIYTIASLLGKILEEQNKELNFLLQQHLALEGVGNMHGQWI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0354 187 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Aed10g0354 187 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Aed10g0354 187 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g0354 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Aed10g0354 187 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed10g0354 187 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Aed10g0354 187 ProSiteProfiles K-box domain profile. 84 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g0354 187 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 181 - -
Aed10g0354 187 Coils Coil 77 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0354 Aed-Chr10 2858844 2861606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0354 1 150 MADS-box Gene Family AT5G20240 68.000 7.55e-72 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed10g0354 K-box 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0354 K09264 - gmx:100795861 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0354 10 2858844 2861606 Aed10g0354 10 2858844 2861606 ECH