Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0343 ATGCAAGATGGAATTAACTATGTGGGAATGGATACTTTTGTCTTTTGCTTCTCCGCATCTTCTTCCCTTTATGCTTCATATTACATCAGGAGTCCAGCTATACATGATATTGTAACATTTAAAGATCCAAGACAGCACCCTGGAGAAAACACAGATGCTGTTTTGATTAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTCATGATGGGGCACTCTACATCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCAGAGCCACCAGCATACACAATGCAATTAACATATGTGCCCAATGGTCATGTTTATGTGTTGGGGGATAATCGTAACAATAGTTATGATTCCCATGAGTGGGGACCACTTCCTATTAAGAACATAGTTGGAAGATATGTTACTTGCTATCATAGACCAACACACGTTTGA 429 0.3986 MQDGINYVGMDTFVFCFSASSSLYASYYIRSPAIHDIVTFKDPRQHPGENTDAVLIKRIVAKAGDTVEVHDGALYINGVAQQEDFIAEPPAYTMQLTYVPNGHVYVLGDNRNNSYDSHEWGPLPIKNIVGRYVTCYHRPTHV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0343 142 PANTHER SIGNAL PEPTIDASE I 25 141 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed10g0343 142 SUPERFAMILY LexA/Signal peptidase 14 136 IPR036286 -
Aed10g0343 142 ProSitePatterns Signal peptidases I signature 3. 104 117 IPR019758 GO:0004252|GO:0016021
Aed10g0343 142 PRINTS Bacterial leader peptidase 1 (S26A) family signature 55 67 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed10g0343 142 PRINTS Bacterial leader peptidase 1 (S26A) family signature 99 118 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed10g0343 142 Pfam Signal peptidase, peptidase S26 26 134 IPR019533 GO:0004252|GO:0006465
Aed10g0343 142 PANTHER CHLOROPLAST PROCESSING PEPTIDASE-LIKE 25 141 - -
Aed10g0343 142 Gene3D Umud Fragment, subunit A 11 139 - -
Aed10g0343 142 TIGRFAM sigpep_I_bact: signal peptidase I 27 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed10g0343 142 CDD S26_SPase_I 29 131 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0343 Aed-Chr10 2782027 2784532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0343 30 133 MADS-box Gene Family AT1G29960 30.769 7.02e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0343 K03100 - gmx:100306121 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0343 10 2782027 2784532 Aed10g0343 10 2782027 2784532 ECH