Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed10g0339 | ATGGCGCCAATCCTGCAGAGTTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCTCACCAGGACGAAGTTGTTCGAGTACTCACGAACACCCTTGAAACTGGAAGTGTAATTACCCCTTCTAAATCCCTCTACCTCCTCCTCCTCCTATGCCCCCACATGCTCTTCTATGGTCCTCCCGGTACTGGAAAAACAACTACTGCACTTGCAATTGCTCATCAGCTTTTCGGGGCTGAACTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTACGGACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTAATCAGCGTAAGAATGGTTATCCTTGTCCCCCATTTAAGATTATTGTTCTAGATGAGGCAGATTCAATGACAGAAGATGCTCAGGCATGTTTGATATGTATTTCCTTCCTAATTCCTAATTTTGTCTATATCATAAAGTGTTATTGTTTCACGCCAACTGCAATTTCTGTACAGAATGCCTTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCACTGTCAGAAGAAATCATGAGCAGCCGAGTATTATACATCTGCAAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCATGGAGATCTTCGCCGAGCAATCACATACTTGCAGTCTGCAGCTCGCCTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTGTTCCAGCAAAGGTTGTGGAGGCAGTTCTTAAAGCATGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGGCCGTTGTTGAAGAAAATGACTTGGCAGATGAACAGAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGTGTCTAGTTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCACTGCAATGCAAGCATTTAGTAACATGCCAGAAGGATTTGCTTACGATAGTTAG | 1131 | 0.4279 | MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSVITPSKSLYLLLLLCPHMLFYGPPGTGKTTTALAIAHQLFGAELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPFKIIVLDEADSMTEDAQACLICISFLIPNFVYIIKCYCFTPTAISVQNALRRTMETYSKVTRIIEPLASRCAKFRFKPLSEEIMSSRVLYICKEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEAVLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAVVEENDLADEQKARISKKLGEADKCLVDGADEYLQLLDVVSTAMQAFSNMPEGFAYDS | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed10g0339 | 376 | Pfam | Replication factor C C-terminal domain | 275 | 359 | IPR013748 | - | |
| Aed10g0339 | 376 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 274 | 360 | IPR008921 | GO:0003677|GO:0006260 | |
| Aed10g0339 | 376 | PANTHER | REPLICATION FACTOR C SUBUNIT 4 | 7 | 364 | - | - | |
| Aed10g0339 | 376 | SMART | AAA_5 | 55 | 199 | IPR003593 | - | |
| Aed10g0339 | 376 | Gene3D | - | 209 | 273 | - | - | |
| Aed10g0339 | 376 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 7 | 364 | - | - | |
| Aed10g0339 | 376 | Pfam | ATPase family associated with various cellular activities (AAA) | 59 | 145 | IPR003959 | GO:0005524|GO:0016887 | |
| Aed10g0339 | 376 | Gene3D | - | 4 | 208 | IPR027417 | - | |
| Aed10g0339 | 376 | CDD | HLD_clamp_RFC | 208 | 267 | - | - | |
| Aed10g0339 | 376 | Gene3D | - | 274 | 363 | - | - | |
| Aed10g0339 | 376 | CDD | AAA | 57 | 147 | - | - | |
| Aed10g0339 | 376 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 266 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed10g0339 | Aed-Chr10 | 2752470 | 2758039 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed10g0339 | 1 | 372 | Core DNA Replication Machinery Family | AT1G21690 | 66.841 | 5.07e-179 | 498 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed10g0339 | K10755 | - | gmx:100798331 | 584.719 |