Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0326 ATGCATATGAATGGATTCAGAGCAAGGGCTTTTCTGCGCTCAATCTCATTTTGTAAATCAAAGTGGCATCATCACCATGTCCATGAAGATCAAATCCATTTCTCTCAAAATCTCACCACCTCCACAGCAGGTCCTGAGTTTATGGAACTGTCTATTCAGAGGCAGAGGCAAGTTGTCGAGGCACTCAGCTTGGGTGACAGAAAGAAGGCTTCAGACCTACTTTCGGATTTTGGTTCCAGAAGCCACTCATTAACAGCTGATGATTTTGTTCATGTTTTTAAGTTCTGCGCACGCTCTCCTGATCCTACGTTTGTTATGGAGATTTGGAGATTCATGGAGTTAAAAGGTGTTGGCATGAACAATATATGCTCATTTCTTATGATGCAGGCCCTTTGTAATGGGGGTTACTTGGAAGAGGCCTTTGACATCGTGGATTATCTTGGAGGGAGTCAATGTGTCTATCCAGTTCTCCCACTGTACAATAGTCTCTTAAGATCATGCACAGAAATGCAGAATATAATTCAAGCAAGCAGATGTTTGGAGTTAATGGAAAAGAAGATGGTAGGGAAGAATGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTACAGCCCATCTCATTTGGCAGGAGTATATTAAAAACTATAGCATGAGTATCATTGCTCTGGATAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTAGAATCTGCATATAAAATACTACTACAAATGGTGTCATTAGCCATCAGGGGAAACATTTCTATTGCTAGAACAGTTTATGGGAAGTTGGATTCTACTAGACTGGACATCCCTGTGCCTTCAAATAAGGGTCTAAGCTCAACCATATTGGACTTGAATGACAACAAAAATTTGGACTCTTGTATACACTCTCGTCTCATGTACATACCTGACAGTATTTCTGCAAGTATAGAGCAACAGATTATTTGTATGGGGAATAAAAAAGCTAAGAGTACTGAATTATCTGGGCTGAATGGACAAAAACACCCACTGCTTAAGATGGCGTTGAGGTGGTCCTTTAATGATATAATACATGGGTGTGCAAAACAAGAAAATCATATGCTTGCAAGGAAGCTTATGTTACAGATGAATAATCTTGGTTTGCAGCCATCCAGACATACATATAATGGCATTATTAAAGTTGTTTCTCAGAGAAGTTTTGGGGATGCAATAAGAGTGTTGAAAAAGATGCAGCAGAAGAATTTGAAGCCATATGATTCAACTCTAGCAACACTTTCAATCACTTGCAGCAAAGCACTACAACTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGTTTTGCTAGCATCATGCAATCAACTGAATCAGCCTGAACGTGCTATGCGAGTGTTTGCCAAGATGGAGCAGAAAAAAGTTTTACCTAATATCAGGACATGCGAGCTTCTACTTTCATTATTTGGTGTTGTAAATGCCCATTATGAAGACTGTAATGTGCAGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAAGTATATGGCCAAAAATGGAATTCAGCATAGTCACATTTCAATGAATAATATATTAGCCACTGGGAAGATCGTCGCTCTGAAGAAGACTCGTCTCCACGAGGACGAAGAAGGTGTCCCTCCCACCACTCTCCGCGAGGTTTCCATTCTGCGAATGCTCTCTCGCGATCCTCATGTCCGGTTATTCCACGCCACGCTACGCTACAGGTTGATGGGTCAGAACAAGGAAGGGAAGACAGTGCTCTACTTGGTATTTGAGTACATGGATACCGATCTCAAGAAATTCATTCGCTCTTTCCGTCAAACCGGAGAAACCATTCCACCCCAAACCATTAAAAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGGATATTACACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATTGCTGATCTCAGATTCGCTCAAGCATTTACTGTGCCAATTAAGAAATATACACACGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTCCTCTTGGGTGCTACCCATTACTCTATGGCGGTGGACATATGGTCGGTTGCCTGCATATTTGCCGAACTTGTCACTAAACAAGCACTCTTTGCTGGTGATTCCGAGCTGCAACAACTCCTGCATATATTCAGGCTATTGGGAACTCCTAATGAAGAGGTGTGGCCTGGCGTGAGTAAACTAATGAACTGGCATGAATATCCTCAATGGAACCCCCAAAGTCTGTCAAAAGCTGTTCCAAGTTTGGATGAGCTTGGACTGGATTTGCTATCTCATATGTTGAATTACGAAACTTCCAAGCGGATTTCTGCAAAGAAAGCAATGGAACATGCATACTTCGATGACCTAGACAAGAGGCACCTTTAG 2475 0.4141 MHMNGFRARAFLRSISFCKSKWHHHHVHEDQIHFSQNLTTSTAGPEFMELSIQRQRQVVEALSLGDRKKASDLLSDFGSRSHSLTADDFVHVFKFCARSPDPTFVMEIWRFMELKGVGMNNICSFLMMQALCNGGYLEEAFDIVDYLGGSQCVYPVLPLYNSLLRSCTEMQNIIQASRCLELMEKKMVGKNEVTYTELLKLAVLQKNLPTAHLIWQEYIKNYSMSIIALDRFIWSFTRLGDLESAYKILLQMVSLAIRGNISIARTVYGKLDSTRLDIPVPSNKGLSSTILDLNDNKNLDSCIHSRLMYIPDSISASIEQQIICMGNKKAKSTELSGLNGQKHPLLKMALRWSFNDIIHGCAKQENHMLARKLMLQMNNLGLQPSRHTYNGIIKVVSQRSFGDAIRVLKKMQQKNLKPYDSTLATLSITCSKALQLDLAEAFLNQISECLYPHPYNVLLASCNQLNQPERAMRVFAKMEQKKVLPNIRTCELLLSLFGVVNAHYEDCNVQSQVDAAKRINAIEKYMAKNGIQHSHISMNNILATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVRLFHATLRYRLMGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGETIPPQTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLRFAQAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFAGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWNPQSLSKAVPSLDELGLDLLSHMLNYETSKRISAKKAMEHAYFDDLDKRHL 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0326 824 Gene3D Phosphorylase Kinase; domain 1 540 612 - -
Aed10g0326 824 ProSiteProfiles Protein kinase domain profile. 520 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0326 824 Gene3D Transferase(Phosphotransferase) domain 1 614 823 - -
Aed10g0326 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Aed10g0326 824 Pfam Pentatricopeptide repeat domain 455 498 IPR002885 -
Aed10g0326 824 Pfam Pentatricopeptide repeat domain 354 397 IPR002885 -
Aed10g0326 824 Gene3D Tetratricopeptide repeat domain 56 229 IPR011990 GO:0005515
Aed10g0326 824 SUPERFAMILY Protein kinase-like (PK-like) 542 819 IPR011009 -
Aed10g0326 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Aed10g0326 824 Pfam PPR repeat 127 145 IPR002885 -
Aed10g0326 824 Gene3D Tetratricopeptide repeat domain 350 454 IPR011990 GO:0005515
Aed10g0326 824 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 542 - -
Aed10g0326 824 Pfam Protein kinase domain 543 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0326 824 TIGRFAM PPR: pentatricopeptide repeat domain 455 486 IPR002885 -
Aed10g0326 824 SMART serkin_6 519 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0326 Aed-Chr10 2609445 2621927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0326 543 824 Core Cell Cycle Gene Families AT1G20930 81.690 8.49e-165 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Aed10g0326 Pkinase 4.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0326 - - gmx:100780147 907.516