Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0310 ATGGCGGAGACGACCCATCCCATGGACATCGACAGCGACGACCATACTCACACCGCGAGGCCCGACAAGGGCAAAAGTGTCATCGTCGACGGCAGCCCTCCCGCCGCCAGCAGGGCCATTCCGTGGGTCGAAAAATTCCGCCCTCAGTCCCTGGACGACGTCGCCGCCCACCGTGACATTATTGATACAATTGATAGGCTGACCACAGAGAACAGATTGCCTCATTTGCTATTGTATGGTCCTCCTGGCACGGGCAAAACGTCAACGATTCTCGCCGTGGCACGCAAACTGTATGGTTTACAGTACCACAATATGATTTTGGAGCTCAATGCATCAGACGCTAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGTTTATCATTTGGTGTCAAGTCCTCTGTCAAACTGGTATTGTTAGATGAAGCAGATGCCATGACAAAAGATGCCCAATTTGCATTACGTAGAGTTATTGAGAAATATACAAAAAGCACAAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGACGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGAGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTTTCAACACATATGGCTTCTCAGAAGATAACAGAAGAAGCTGTTTACCTGTGCACCGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTACAGATAGCTTCAAAAGAATAGATGAAATGAAGACAAGCAAAGGGTTGGCCGTGGTTGATATTGTCAGAGAAGTGACAATGTTTGTTTTCAAGATTAAGATGCCTTCTGCTGTTCGAGTACAGTTGATAAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACATAG 1044 0.4511 MAETTHPMDIDSDDHTHTARPDKGKSVIVDGSPPAASRAIPWVEKFRPQSLDDVAAHRDIIDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGLQYHNMILELNASDARGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEELDVEDSGLAALSTHMASQKITEEAVYLCTGNPLPKDIEQISYWLLNEQFTDSFKRIDEMKTSKGLAVVDIVREVTMFVFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0310 347 Gene3D - 248 345 - -
Aed10g0310 347 MobiDBLite consensus disorder prediction 1 33 - -
Aed10g0310 347 CDD AAA 60 198 - -
Aed10g0310 347 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 33 343 - -
Aed10g0310 347 SUPERFAMILY post-AAA+ oligomerization domain-like 248 338 IPR008921 GO:0003677|GO:0006260
Aed10g0310 347 MobiDBLite consensus disorder prediction 1 24 - -
Aed10g0310 347 Pfam ATPase family associated with various cellular activities (AAA) 76 197 IPR003959 GO:0005524|GO:0016887
Aed10g0310 347 PANTHER REPLICATION FACTOR C SUBUNIT 5 33 343 - -
Aed10g0310 347 Pfam Replication factor C C-terminal domain 248 334 IPR013748 -
Aed10g0310 347 Gene3D - 35 198 IPR027417 -
Aed10g0310 347 SMART AAA_5 72 202 IPR003593 -
Aed10g0310 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 230 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0310 Aed-Chr10 2488048 2493055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0310 1 346 Core DNA Replication Machinery Family AT1G77470 74.324 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0310 K10756 - gmx:100782652 621.698