Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0308 ATGGAAGGTGAGGAGGGGAAACAGTCTCCCCACAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTTGATTTTATTTTAGCAATGAGCATGCAAGAACAAGAGAGAGAGTTCACAATGCTTCCAACTATTGAAAGTGAAACTGATGAATATCTAAGTGCCTCCTCTTTTGATAATGATGATGATGATCCTGACTTTACAATGAGTCAAGTGTTTCAAACTGACATCCTTCGGTTTCTTGAAGGCGAAGGAGACGACGATGATGAAGACATGGAAATGGAAGAAGGTGAGATTGATTTAGACGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAGACAAGAGGATTATCAGCAAATGAAATCTCTTTGTGCTTGTACCCTTATACTTGCCAATGTGCTGAAAGCAAAAGTGGCATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCACTGGTGGCACTTCAATGTGAGCACCCTTATCATTTAGATTGCATAAGCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATATGCAGCAATGAAGTTTCAACTCTCAATATGGCTTCGAACCCTTAG 606 0.396 MEGEEGKQSPHKNPYVELEEVDFDFILAMSMQEQEREFTMLPTIESETDEYLSASSFDNDDDDPDFTMSQVFQTDILRFLEGEGDDDDEDMEMEEGEIDLDELSYEELMELGEFIGEETRGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEEGEALVALQCEHPYHLDCISKWLQIKKVCPICSNEVSTLNMASNP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0308 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 197 IPR045191 GO:0061630
Aed10g0308 201 SMART ring_2 148 188 IPR001841 -
Aed10g0308 201 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Aed10g0308 201 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 197 - -
Aed10g0308 201 SUPERFAMILY RING/U-box 147 194 - -
Aed10g0308 201 Pfam Ring finger domain 147 188 IPR001841 -
Aed10g0308 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0308 Aed-Chr10 2477270 2477875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0308 59 192 C3H Transcription Factor Family AT3G63530 39.583 2.01e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0308 K19045 - gmx:100526881 326.635