Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0306 ATGGCGGTGGGAAAGAACAAGAGGATTTCGAAGGCCAAGAAAGGTGGCAAGAAGAAGGCCGCTGATCCTTTTCCGAAGAAGGATTGGTACGATATCAAGGCCCCTTCTGTGTTCCAGGTCAGGAATGTTGGCAAAACCCTCGTCACTCGTACTCAGGGCACCAGGACTGCTTCGGATGGACTAAAACATCGAGTGTTTGAGGTGTCATTGGCTGATCTTCAAGGTGATGAGGACCATGCATTCAAGAAGATTCGTTTGAGAGCTGAGGATGTTCAAGGCAAGAACGTTCTCACCAACTTCTGGGGAATGAATTTCACAACTGACAAGTTGAGGTCTTTGGTTCGAAAATGGCACACTTTAATTGAAGCTCATGTAGATGTGAAGACCACTGATCATTACACTTTGAGGATGTTCTGCATTGGGTTTACTAAGAGGCGTAGTAACCAAGTCAAGAGGACCTGTTATGCACAATCCAGCCAAATTAGACAGATTCGCAGGAAGATGAGAGAGATAATGATAAACCAGACAACATCGTGTGATTTGAAAGAGTTGGTCCGCAAGCTCATTCCTGAGATGATTGGAAAAGAGGTTGAGAAAGCGACATCTAGCATATATCCTCTGCAGAATGTCTTCATTCGTAAAGTTAAGATCCTTAAAGCTCCAAAGTTGGATCTTGGGAAACTCATGGAGGTTCATGGGGATTGCACAGAAGATGTTGGTATGAAGGTGGAAAGACCTGCTGACGAAACAATGGTTGAGGGAGCTCCAACTGAAGTTATTGGAGCTTGA 789 0.4474 MAVGKNKRISKAKKGGKKKAADPFPKKDWYDIKAPSVFQVRNVGKTLVTRTQGTRTASDGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDHYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQTTSCDLKELVRKLIPEMIGKEVEKATSSIYPLQNVFIRKVKILKAPKLDLGKLMEVHGDCTEDVGMKVERPADETMVEGAPTEVIGA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0306 262 Hamap 40S ribosomal protein S1 [RPS3A]. 1 259 IPR027500 GO:0003735|GO:0005840|GO:0006412
Aed10g0306 262 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Aed10g0306 262 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Aed10g0306 262 MobiDBLite consensus disorder prediction 1 15 - -
Aed10g0306 262 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 259 - -
Aed10g0306 262 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 259 - -
Aed10g0306 262 MobiDBLite consensus disorder prediction 1 23 - -
Aed10g0306 262 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0306 Aed-Chr10 2458819 2460033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0306 1 262 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 82.510 8.60e-157 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0306 K02984 - gmx:100781570 449.129