Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0281 ATGTCATTGAGTCCTCCGAGAGAGAGAAACAATGGGCATGGCCAAGCAAGGACGACGTTCCAGATGTACTGGTGCTTCCAGTGCAACCGCACGGTCCGCGCCGCACCCGATAATAACAACCCCTCCGAAGTCGCCTGCCCCCGCTGCTTCGGCCAATTCATCTGCGAAATAAACATGCCACGTCCAAGACTCGTGGTGGACTTCACCACACTGGACCCCTCTCCAGAAGCGCGTTTGCTAGAAGCACTTTCCCTCATGATGGACCCACCCATCCGCCGCTTCCCGGGTCTCATCCAACCCCAACCTCAACGCCAACCCCAACCTGAACTCGAAGAGGTCCCCGAGCACCACCGACGCCGCCGCCCCCGTCGACGCCAGCCCGAACCCGAGCCCCACCCTCGCCCCCGCACCTGGATCGTCTTCCAGCCCATGGATCAATCCGACCCCTACGAGCCCATTAACATCCCAAACCGACACGGCCCAGGCCCAATCCACGGCAACGCGCGAGATTACTTCTTGGGGCCAGGGCTTAACGAACTCATAGAGCAGATAACGGAAAACGACCGGCCGGGTCCGGCGCCGGCGCCGGAGAGGGCCATAGAGGCGATTCCGAGGGTGAAAATCGAGAGCGGGCATCTGAAGGAGAATTCTCAGTGTCCGGTATGTCACGAGGAATTCGAATTGGGTGGAGAAGCGCGGGAACTTCAATGCAAACACGTATATCACTCCGATTGCATTGTTCCCTGGCTGAGGCTTCACAATTCTTGCCCTGTGTGCCGGAACGAGGTGCCGGTGTCTTCTTCGGAGGAGGAGGATGATGATGAATGCGTTGCTACTGATGATGGCCGAGAAGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACTCGTCGTAGTTTTACTTCGCTTTGGCATCATCGACGGGTTCACCCTCAAGGATATAATAATACTGTTGCTGCTGCTTCTTCTTCTTCAAGGGGTGAATCATACTTCATTTAA 996 0.5683 MSLSPPRERNNGHGQARTTFQMYWCFQCNRTVRAAPDNNNPSEVACPRCFGQFICEINMPRPRLVVDFTTLDPSPEARLLEALSLMMDPPIRRFPGLIQPQPQRQPQPELEEVPEHHRRRRPRRRQPEPEPHPRPRTWIVFQPMDQSDPYEPINIPNRHGPGPIHGNARDYFLGPGLNELIEQITENDRPGPAPAPERAIEAIPRVKIESGHLKENSQCPVCHEEFELGGEARELQCKHVYHSDCIVPWLRLHNSCPVCRNEVPVSSSEEEDDDECVATDDGREEGRLRRCLRWTRRSFTSLWHHRRVHPQGYNNTVAAASSSSRGESYFI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0281 331 SMART ring_2 219 259 IPR001841 -
Aed10g0281 331 Pfam Ring finger domain 218 260 IPR001841 -
Aed10g0281 331 PANTHER - 12 281 - -
Aed10g0281 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 281 - -
Aed10g0281 331 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Aed10g0281 331 Pfam zinc-ribbon 21 57 IPR039525 GO:0061630
Aed10g0281 331 SUPERFAMILY RING/U-box 199 266 - -
Aed10g0281 331 MobiDBLite consensus disorder prediction 92 137 - -
Aed10g0281 331 CDD RING-H2_RNF126_like 218 260 - -
Aed10g0281 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 267 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0281 Aed-Chr10 2280743 2281738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0281 191 315 C3H Transcription Factor Family AT1G68180 40.157 2.88e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0281 K11982 - gmx:100787399 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0281 10 2280743 2281738 Aed10g0281 10 2280743 2281738 ECH