Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0273 ATGGCCGAGACTCGGAGATCCACGGGCACGGTTAAGTGGTTCAACGCGCAGAAAGGTTTCGGATTCATAACTCCCCAAGATGGAACCGATGATCTCTTCGTCCACTTCACTTCCATCCGATCCGACGGCTACCGTTCTTTATCCGAGGGTCAGTCCGTTGAGTTCCTTCTCGATTACGGCGACGACGGCCGCACCATGGCCGTCGACGTCACCTCCCCCGTTAGATCTCGCCGTCCCGGAGGAGGGAAGGGCAGAGGAGGAGGCCGGAGAGGAGGTGGAGGTGGAGGAAGAGGAAGAGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGCCACTTGGCGAGGGATTGTTACCATGGACAGGTATATGTTTTCCACACTTTGCTAATTCTTTTGTCTAAGACGTCTTGA 414 0.5435 MAETRRSTGTVKWFNAQKGFGFITPQDGTDDLFVHFTSIRSDGYRSLSEGQSVEFLLDYGDDGRTMAVDVTSPVRSRRPGGGKGRGGGRRGGGGGGRGRGGGPECYNCGRIGHLARDCYHGQVYVFHTLLILLSKTS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0273 137 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Aed10g0273 137 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Aed10g0273 137 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Aed10g0273 137 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Aed10g0273 137 Pfam Zinc knuckle 104 118 IPR001878 GO:0003676|GO:0008270
Aed10g0273 137 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Aed10g0273 137 MobiDBLite consensus disorder prediction 71 102 - -
Aed10g0273 137 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Aed10g0273 137 Gene3D - 74 123 - -
Aed10g0273 137 Gene3D - 1 71 IPR012340 -
Aed10g0273 137 PANTHER GLYCINE-RICH PROTEIN 2-LIKE 1 124 - -
Aed10g0273 137 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Aed10g0273 137 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Aed10g0273 137 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Aed10g0273 137 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Aed10g0273 137 SMART csp_8 8 73 IPR011129 GO:0003676
Aed10g0273 137 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 124 - -
Aed10g0273 137 SUPERFAMILY Retrovirus zinc finger-like domains 86 119 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0273 Aed-Chr10 2227352 2227978 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aed10g0273 CSD 6.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0273 - - gmx:100815731 194.897