Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0267 ATGGAGAAGTTGCAAAGTGGTCTGCAGGAACGTAACTTATCAGTCTCCACCGTCCCACAAAAGGGTCGTTCTCTCTTCGCTACTAGGGATTTCTACCCAGGGGAGGTGATTATAGGCCAAGAGCCTTATGTTTGTGTTCCAAATAACAATAACTCCTCAGTGTCTGCCCAGAAAAGGTGTGATGGATGTTTCACTACAAGTACAACTAATGTCCTTAGCAGGTGCTCACGTTGTCAAGTTGCATGCTATTGTGGAACTGCATGTCAGAAGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCGAGGCTGGACAAGGACAAGAGAAAATCTGTCACACCATCCATACGGTTGATGGTGAGACTTTATCTTCGGAGGAAGTTGCAAAATGATAAGATCATCCCAAGCTCTGCAATGGACAACTGCAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGGCATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTACAATGGCCAGAAATCAACATAAAAGAGATTGCAGAAAATTTTTCAAAGTTTGCATGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCCATCATCAATCACAGCTGTTTGCCCAATTCTGTATTGGTTTTTGAGGGAAGGTCAGCTTTGGTACGTGCTATGCAGCATATACCCACAGGGACTGAGGTGCTGATAAGTTATATAGAGACTGCTGGAAGCACTATGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCCTCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAAATGCAAAAGTGAACAATGTGGTGGTTTCTTGCTTCGTACAACTGATGGGAAAGGATTCCAATGCCAAGGGTGTGGACTAGTTAGGGACAAGGAGGAGATAAAGAGAATTACAACTGAAATTAAATTGCTATCTGAAGAAGCTTCTAAGCCCTCTTCCACTTGCAATTATCAAGAAGCTATTTCCATATATAAAAGGATTGAGAAGCTGCAAACAGAACTCTATCATCCATTATCAATCAACTTGATGCAAACTAGAGAGAAGATTTTGAAGTCACTAATGGAGCTGGAACACTGGACAGAAGCTTTGGCATATTGCAAATTGACCATACCATTTTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCTTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTGGGAGACACAGAGGAAGCTGTTAAATCACTGAGCAAGGCCGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTTATGAAGTTGGAAGAAGCCCGTGCCGAAACATCTTACAAATTCTCCTCTAAAGAGTAA 1464 0.4255 MEKLQSGLQERNLSVSTVPQKGRSLFATRDFYPGEVIIGQEPYVCVPNNNNSSVSAQKRCDGCFTTSTTNVLSRCSRCQVACYCGTACQKSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVRLYLRRKLQNDKIIPSSAMDNCNLVEALVAHMSGITEEQLVLYAQMANLVNSILQWPEINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAMQHIPTGTEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYKCKSEQCGGFLLRTTDGKGFQCQGCGLVRDKEEIKRITTEIKLLSEEASKPSSTCNYQEAISIYKRIEKLQTELYHPLSINLMQTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLSKAVDILRITHGTNTPFMKDLFMKLEEARAETSYKFSSKE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0267 487 Pfam MYND finger 60 100 IPR002893 -
Aed10g0267 487 Gene3D Tetratricopeptide repeat domain 408 485 IPR011990 GO:0005515
Aed10g0267 487 Pfam SET domain 22 254 IPR001214 GO:0005515
Aed10g0267 487 SUPERFAMILY TPR-like 353 453 IPR011990 GO:0005515
Aed10g0267 487 SMART set_7 11 261 IPR001214 GO:0005515
Aed10g0267 487 Coils Coil 326 346 - -
Aed10g0267 487 ProSiteProfiles SET domain profile. 11 255 IPR001214 GO:0005515
Aed10g0267 487 ProSitePatterns Zinc finger MYND-type signature. 60 100 IPR002893 -
Aed10g0267 487 Gene3D SET domain 24 281 IPR046341 -
Aed10g0267 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 479 - -
Aed10g0267 487 ProSiteProfiles Zinc finger MYND-type profile. 60 100 IPR002893 -
Aed10g0267 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 479 - -
Aed10g0267 487 Gene3D - 59 112 - -
Aed10g0267 487 SUPERFAMILY SET domain 11 254 IPR046341 -
Aed10g0267 487 Gene3D - 113 197 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed10g0267 SET 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0267 K11426 - gmx:100789518 890.952