Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0263 ATGGCTATCGCTACGGTGGATAATTTGCAGAGTAAAGAACAGAAGATGGCACAAACGCTGGCAATGCCCGTGGCACCTTCGCTCGCTATCATCTCCAATTCTCGCCTCTCCAACACAGTCTCCGTTCCCGTTCTGAACAACCCTAAGGTTCAAGGGTTAAGCATCAAGTGCGTTCGTGTCGGCGGTGTGGAGATTCCGAACAACAAGCGAATCGAGTACTCGCTGCAGTACATTCATGGAGTTGGGAGAACCCGAGCGAAACAGATTCTTTGTGACATCAGCATGGATAACAAAGTAACGAAGGAACTCACTGAGGAGGAGCTCATCACTCTCAGGGACGAAGTTTCCAAATACATGATCGAAGGGGACCTGAGACGGTTCAATGCGATTAATATAAAGAGACTGAAGGAAATCCAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCAGAGGACAGCGAACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCCGGTAAAAAGAAGAAGTAA 534 0.4794 MAIATVDNLQSKEQKMAQTLAMPVAPSLAIISNSRLSNTVSVPVLNNPKVQGLSIKCVRVGGVEIPNNKRIEYSLQYIHGVGRTRAKQILCDISMDNKVTKELTEEELITLRDEVSKYMIEGDLRRFNAINIKRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0263 177 Pfam Ribosomal protein S13/S18 59 163 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g0263 177 ProSiteProfiles Ribosomal protein S13 family profile. 60 166 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g0263 177 Gene3D - 58 126 - -
Aed10g0263 177 ProSitePatterns Ribosomal protein S13 signature. 142 155 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g0263 177 SUPERFAMILY S13-like H2TH domain 58 169 IPR010979 GO:0003676
Aed10g0263 177 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 10 176 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g0263 177 Gene3D 30s ribosomal protein s13, domain 2 127 177 IPR027437 -
Aed10g0263 177 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 10 176 - -
Aed10g0263 177 TIGRFAM uS13_bact: ribosomal protein uS13 59 168 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g0263 177 Coils Coil 101 121 - -
Aed10g0263 177 Hamap 30S ribosomal protein S13 [rpsM]. 57 173 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0263 Aed-Chr10 2121830 2122802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0263 58 175 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.944 8.12e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0263 K02952 - gmx:100499902 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0263 10 2121830 2122802 Aed10g0263 10 2121830 2122802 ECH