Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0254 ATGCTCTGCTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCCGTGGGAGGGCATGGCGGAGGGAGGCGATGCCGCTGCCGTGGAGAGGCGGTGCGAGGCTAATTTTCCGGCGGAAATTCCTCGTGACTCTGCTGTGCGTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTTGCGGAGCGTTCGCCTTTCGATGTTGCTGAAGAAACGTCGACTTCCGCCGCTGCGGTTACTCTGCCCAGTGGGCTGGCCAGTTTGCTGAACCGTCAGGGTGATAACCGGAGGCGTCCCAAGAAGTCTCATTCTGGCGCGAATAAGAGGAAATCTTCGAATAGGGCGAAGCAGAAGAAGCCGGAGGACTCTAACATTTGGATTGAGACGGAGGAGTACTTTAGGGACTTGACCTTGGCTGATATTGACACCTTGTTTGAGGCCTCTCGCACTTCTAGTTTAGTTTCTCAGGACTCTTTCTCCATCCCGTGTTTGGGAAATGCTCCTAGCTACAATGCGGTTACTAGTAACAGTGGAAATGAAATGGAGCCTGTTCCAAAATTCAATGTAGTAGTTAGCAGCGAGGATGAAAAAAAAGGTGAGGATCAAAACAAGGGTGGTGAAGTGGTGGAAAATGAGGATGAATTGTTGGTAATTGAGGCAATTGACGATGATGTTGTTGAACAAGCTCCTCCTGAGGAAGATAAGAGTCAGGAGACTCAGGACATTTCTGATTCTTCTGTTCGTGTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCATTGGCTTCTGAGCGCCCTACCAAGAAAAGGAGGCTTTTGGGTGTTGATGCTGGTTTGGAGAAAGTTATAATGACTTGCCCTTGTGATGAGGGCCAACTGTTTTGCCATTATTGTGGCAGGGGAGACACTGGCAGAGATTCCAATAGGTTAATTGTCTGTGCTTCTTGTAAAGTGGCAGTTCATGAGAAGTGCTATGGTGTGCATGATGATGTAGACGAGGCTTGGCTGTGCTCCTGGTGTAAGCAAAAGGGTGATGTTGATGAATCGGTGAATCCTTGTGTTCTTTGCCCAAAGAAGGGTGGTGCATTAAAACCAGTTAGTAGCAGCACGGAAGGTGCGGGGTCGGTCCCATTTGTGCACTTGTTTTGTTCTCTTTGGATGCCTGAGGTTTATATAGATGATTTAAAGAAGATGGAACCTGTTATGAATATGGGAGAAATCAAGGAAACCCGGAAGAAATTAGTGTGTTGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGGTGTAGCCATGTACATCTGCACAAAATTGTGCTGTACTTCAAGTACTTGCATCCACAAGTAGTGTATTCTTGCACTGATCAAGTTGAGTTGCGGACTTTTTGCTTGAAACACTCAGATCTACCAAAGAACAGAAGCATCTTGCCATTGGAAGGCTCTATCACGTTTAGAAATGATATTTCAGAAGCCAATGGCCTTCCAGTGACATTGCCAGTGAGTGGTGAACAGAACAAGAAAGATTGCAGGAATGGAGGATTAGCCTCTGATAGTAGTCCGGACAAACTGAACCATAATGATGACCCACCAGATGGAGGAGTATCTGATTGCAGGTTAAGTGCTCACGATGACATGTTGGGATGTGATGCTGTGCCTCAACATATTGTTGGAGTGGTAGGGAGAGCCAATGAGAATGTTGATGCATCTGACTCTCTTAGTTTTGCACTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGACGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACTAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAGGGTTTAAAAGTTAAGTTCAAACCAGCCAATGCATCCAAAAATGATAGTGGAGCCACAGATGGCTCTGATAGTTTACCAATATCAGATTTGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGAAGAACTACCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGGGTTACTGGTGAGAATGGGATGCCCATGGACATGTGCAGAGTAGGTCAGTCTGGCTGTGAAAATCCAACAAATTCTAATGAAGCATCCATTCCGAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTTTCATGTTCAAGGCAATGCTGATGAACCTCACAAACCCTGCTTATCTGGTTGCGTTTCAGAAGACAAGTCTACTGCTTGTTTGCAAAATGCTTCTGTGCTTTCTGATCAGCGCTGTCTTGTTCATTCTGCTTCAGAACCACCCAATTTTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATCCATCCGTACATCAACAAGAAATTGCTGCAGATTCGTGATGGGTTCCCCTTGGAGGACATTAGATGTTCAAGTGATGAGGGAAATTCTTCTTTGGTTAAGTCCTTTGGGGCTAGTGGCTGTTCAAGTAGCCAAAATCAGAACTTAACTCACTTTGACATTTCAAAGCCTGACGAAGTAAATATGGAGCAGTTGGTTAGGGCTAGAAAAATGGGACTTTTGGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGTATAGATTACTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCTACAGTGTTGCCAAGAATTTGCCACATGATATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAAGGCAGAAAAGAAAGAAAGCACAAAGAAGCACAAGCAGTGTTGGCTGCTGCAACTGCTGCTGCGGCAGCTTCTACTAGGGCTCTCCGGAAAGACACCTTAGATGAATCAATGCAACAAGAGGTCATAGATGCTTTGTTCTCTTTGTCGCTCTCTCTCTCTCTAATAATTAGCTAA 3033 0.4395 MLCFLCTLLLPAMTGDRCHPWEGMAEGGDAAAVERRCEANFPAEIPRDSAVREIDYLSQARKALAERSPFDVAEETSTSAAAVTLPSGLASLLNRQGDNRRRPKKSHSGANKRKSSNRAKQKKPEDSNIWIETEEYFRDLTLADIDTLFEASRTSSLVSQDSFSIPCLGNAPSYNAVTSNSGNEMEPVPKFNVVVSSEDEKKGEDQNKGGEVVENEDELLVIEAIDDDVVEQAPPEEDKSQETQDISDSSVRVEWFLGCRNKVSLASERPTKKRRLLGVDAGLEKVIMTCPCDEGQLFCHYCGRGDTGRDSNRLIVCASCKVAVHEKCYGVHDDVDEAWLCSWCKQKGDVDESVNPCVLCPKKGGALKPVSSSTEGAGSVPFVHLFCSLWMPEVYIDDLKKMEPVMNMGEIKETRKKLVCCVCKAKCGACVRCSHVHLHKIVLYFKYLHPQVVYSCTDQVELRTFCLKHSDLPKNRSILPLEGSITFRNDISEANGLPVTLPVSGEQNKKDCRNGGLASDSSPDKLNHNDDPPDGGVSDCRLSAHDDMLGCDAVPQHIVGVVGRANENVDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKAHVYTNAFQKGLKVKFKPANASKNDSGATDGSDSLPISDLGLLDPVAVKSVPPRRRTTSNIRILKDNKVICSSEGVTGENGMPMDMCRVGQSGCENPTNSNEASIPNATEMNLTKSEDIFHVQGNADEPHKPCLSGCVSEDKSTACLQNASVLSDQRCLVHSASEPPNFGFIKKDAISSYIHPYINKKLLQIRDGFPLEDIRCSSDEGNSSLVKSFGASGCSSSQNQNLTHFDISKPDEVNMEQLVRARKMGLLEFSPQDELEGELVYFQYRLLQNAVAKKRHIDNLIYSVAKNLPHDIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRALRKDTLDESMQQEVIDALFSLSLSLSLIIS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0254 1010 Pfam PHD-finger 312 345 - -
Aed10g0254 1010 MobiDBLite consensus disorder prediction 498 537 - -
Aed10g0254 1010 ProSiteProfiles Zinc finger PHD-type profile. 296 347 IPR019787 -
Aed10g0254 1010 Coils Coil 944 964 - -
Aed10g0254 1010 Pfam PHD-zinc-finger like domain 356 438 - -
Aed10g0254 1010 SUPERFAMILY FYVE/PHD zinc finger 292 363 IPR011011 -
Aed10g0254 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 472 IPR013083 -
Aed10g0254 1010 SMART PHD_3 298 345 IPR001965 -
Aed10g0254 1010 MobiDBLite consensus disorder prediction 92 127 - -
Aed10g0254 1010 ProSiteProfiles Extended PHD (ePHD) domain profile. 354 470 IPR034732 -
Aed10g0254 1010 PANTHER OS02G0768750 PROTEIN 30 993 - -
Aed10g0254 1010 PANTHER PHD FINGER PROTEINS 30 993 - -
Aed10g0254 1010 MobiDBLite consensus disorder prediction 100 118 - -
Aed10g0254 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 349 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0254 293 437 C2H2 Transcription Factor Family AT3G14740 31.081 7.40e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed10g0254 zf-HC5HC2H_2 7.6e-15 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0254 - - gmx:100775631 1697.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0254 10 2041388 2054065 Aed10g0254 10 2041388 2054065 ECH