Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0250 ATGCCTCGACAACCGCCGCCGTCTCCGCCGTCGCAGCCCAGCGTTCTGGACCCCGAAATCTGGCGGGTCTGCGCCGGAACCCCCGTCGAAATCCCCACGCTGCATTCTAGGGTTTACTACTTCCCCCAGGGACATTTCGATCAAGCGTCTTCCGCTCCAAGAAACCTCTCCCCTCGCCTTCTTTCGAACCCCGCCGTTCCCTGCCGCGTCGCCTCTGCTCAATTCCTCGCCGATCCTCTCACCGACGAGGTTTTCGCGAAACTGGTTCTTCATCCTATCGCTGCGGGAACCTCTAATGTTGTTGCTGCTGCTTCGAGTCAAAACGACGAGAATAACGTCGTTTCCTTCTCAAAGATTCTGACGCCTTCTGATGCTAACAACGGTGGGGGGTTTTCTGTTCCGAGATTCTGCGCGGACTCTATCTTCCCGCCGCTGAACTTCCAGGCGGACCCGCCAGTGCAGAACCTTCTCGTCACCGACGTGCACGGCTTCGCGTGGGAGTTCCGCCACATCTACCGCGGGACGCCGCGGCGGCACCTGCTGACTACCGGCTGGAGCACGTTCGTCAACAACAAGAAACTCGTCGCCGGGGACGCCGTCGTGTTCATGAAGAACTCCAAGGGGGGTTTGTTTGTTGGAATTCGCCGCGCAACGCGCTTCTCTCCGTTGAAGGTCGGTGGCGGCGCGAGGAGCAGGGTGGCTGAGGAGGAAGGAGAGGAAGAGGTGAGGGAGGTTTTCTCGAGGGACGGGAGGGGGAAGCTGTCGGCGAAGGTGGTTGCGGAGGCAGCGGAGCTGGCGGCGAGGAACATGCCGTTTGAGGTTATTTACTATCCTAAAGCTGGTTGGTCGGAGTTTGTGGTGAAGGCTGAGGCGGTAAATGAAGCAATGAGTGCTGAGTGGAGCCCCGGAATGAGAGTGAAGATAGCTACGGAGACCGATGATTCGTCAAGGGTGTCGTGGTGTCAGGGTACGGTCTCTTCTGTTTCTCTTCACGGTCATGACCAATGGCGCCATTCTCCTTGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGGTTTGCAGATAGCAAAATGGGTCAGCCCTTGGCAGGTGGAACGTGTTTCAGCCACACCTGCACTTCATTCAGCATTCACCCCAACAAAAAAGATTAAAACTGGTCATGATTCTGGGGTGTTTACTAATGGAGAGGGAGACCCCTTTCCTATGACAGGATTCAGTAATTCAGCAATGGGACAACTGAATCAGACATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGATTTTCCAATTATCCAGCTGACATGTCTCGTCTGTGTACGGGTAATTCCTTTGGAAACAACACGTTTCCATTGCTGAAACCTTTGGAAACAGGGCTAAATGTTGACAGCTCTCAATCTGATGAATTGTCACCTGATAGCCGTGATAGTCTCAATTCCTGTGGGACAGACCTTGTTGGCAGCAACTCAAGAAAACTTGTGTCTGTTTCATTTCAGCTATTTGGTGCAGTCATTCATACAGAACAGCCTGTTGAAAATGGTTTGCAAGTTGCTGGTTGCACTTGCACAGGAGATGAATGCCAATGTCAAAGAGCCTCGACAGACGAGGATTCTTACTTGTGA 1659 0.5316 MPRQPPPSPPSQPSVLDPEIWRVCAGTPVEIPTLHSRVYYFPQGHFDQASSAPRNLSPRLLSNPAVPCRVASAQFLADPLTDEVFAKLVLHPIAAGTSNVVAAASSQNDENNVVSFSKILTPSDANNGGGFSVPRFCADSIFPPLNFQADPPVQNLLVTDVHGFAWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDAVVFMKNSKGGLFVGIRRATRFSPLKVGGGARSRVAEEEGEEEVREVFSRDGRGKLSAKVVAEAAELAARNMPFEVIYYPKAGWSEFVVKAEAVNEAMSAEWSPGMRVKIATETDDSSRVSWCQGTVSSVSLHGHDQWRHSPWRMLQVTWDEPEGLQIAKWVSPWQVERVSATPALHSAFTPTKKIKTGHDSGVFTNGEGDPFPMTGFSNSAMGQLNQTLLSYGTFPAGMQGARHDVFSASRFSNYPADMSRLCTGNSFGNNTFPLLKPLETGLNVDSSQSDELSPDSRDSLNSCGTDLVGSNSRKLVSVSFQLFGAVIHTEQPVENGLQVAGCTCTGDECQCQRASTDEDSYL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0250 552 CDD B3_DNA 115 216 IPR003340 GO:0003677
Aed10g0250 552 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 544 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed10g0250 552 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed10g0250 552 Gene3D - 299 373 - -
Aed10g0250 552 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Aed10g0250 552 PANTHER AUXIN RESPONSE FACTOR 9 544 - -
Aed10g0250 552 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Aed10g0250 552 SMART B3_2 116 218 IPR003340 GO:0003677
Aed10g0250 552 Gene3D - 113 218 IPR015300 -
Aed10g0250 552 SUPERFAMILY DNA-binding pseudobarrel domain 108 222 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0250 Aed-Chr10 2014588 2018788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0250 16 552 B3 DNA Binding Superfamily AT1G77850 46.820 2.25e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed10g0250 B3 1.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0250 - - gmx:102662128 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0250 10 2014588 2018788 Aed10g0250 10 2014588 2018788 ECH
Aed3g1612 3 20681258 20685285 Aed10g0250 10 2014588 2018788 PCT