Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0243 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATGGAGGTCTGAATTCAATTGCTTCCCCAATGTTAATGGTTGACACTAGTATGGAGAACAAGTCTGAGTATATTCCTCAGGAATCCAGAGAGCCTTCAGGTTCTGGAGCCGATCAAGAGACTACAAATAAAGATGTTAATAAGATGCGAAGACGCCTAGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTGAGGAAAAAGGCTTATGTTAAACAATTAGAATCAAGCCGTTTGAAGCTCATGCAATTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTACATGAGCACTGCGTTAGATGCCAGCTATATAGGATCAACATCAGAAACAATAAACCCAGGGATTGTTGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAGCAAAGGCGGAATGAAGAGCTTAGACATGCATTTCAAACGCAAGCACCTGATGTTCAGCTCAATGCTGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTCTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTCCTCTATTTACTCTCTGGTGTGTGGAAAGCATCGGTCGAGCGCATTTTCCTTTGGATTGGAGGCTCTCGTCCATCACAGCTTCTAAACATTATTGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGTTAGTATTAACAACCTCCGGCTATCATCGCAGCAAGCTGAAGATGCCCTTTCACAAGGAATGGAAAAACTTCAGCAGAGTTTGGTCCACGACATGGCAGTTGGTCCATTGAGTGTAGGAAACTTGGGACTTCAGATGGCTCTTGCTATGGACAAATTTGAGGCACTAGAAAGTTTTGTAAGCCAGGCAGATCACCTTAGGCAACAAAGTCTGCGTTACATGTCAAGCATCCTGTCAACTCACCAAGCTGCTCGCGGCTTGCTGGCTCTTGGAGAATACTTTCACCGTCTTCGCACCCTTTGCTCTCTTTGGGCTGCTCGTCCATGTGAACTCGTCTAG 1065 0.446 MKMDIYEPFQQVSMWGDSFKVDGGLNSIASPMLMVDTSMENKSEYIPQESREPSGSGADQETTNKDVNKMRRRLAQNREAARKSRLRKKAYVKQLESSRLKLMQLELEIGKARKQGLYMSTALDASYIGSTSETINPGIVAFEIEYGQWVEEQQRRNEELRHAFQTQAPDVQLNAVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVSINNLRLSSQQAEDALSQGMEKLQQSLVHDMAVGPLSVGNLGLQMALAMDKFEALESFVSQADHLRQQSLRYMSSILSTHQAARGLLALGEYFHRLRTLCSLWAARPCELV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0243 354 SMART brlzneu 64 125 IPR004827 GO:0003700|GO:0006355
Aed10g0243 354 Coils Coil 88 115 - -
Aed10g0243 354 MobiDBLite consensus disorder prediction 43 68 - -
Aed10g0243 354 Pfam bZIP transcription factor 69 97 IPR004827 GO:0003700|GO:0006355
Aed10g0243 354 MobiDBLite consensus disorder prediction 43 63 - -
Aed10g0243 354 PANTHER FACTOR TGA7, PUTATIVE-RELATED 3 351 - -
Aed10g0243 354 PANTHER TRANSCRIPTION FACTOR TGA9 3 351 - -
Aed10g0243 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Aed10g0243 354 Pfam Seed dormancy control 158 231 IPR025422 GO:0006351|GO:0043565
Aed10g0243 354 ProSiteProfiles DOG1 domain profile. 139 349 IPR025422 GO:0006351|GO:0043565
Aed10g0243 354 Gene3D - 68 120 - -
Aed10g0243 354 SUPERFAMILY Leucine zipper domain 69 102 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0243 Aed-Chr10 1979102 1983054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0243 3 352 Calmodulin-binding Proteins AT1G22070 55.616 7.02e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aed10g0243 DOG1 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0243 K14431 - gmx:100794268 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0243 10 1979102 1983054 Aed10g0243 10 1979102 1983054 ECH
Aed3g1616 3 20715464 20720885 Aed10g0243 10 1979102 1983054 PCT