Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0236 ATGTCTTCTTCATCGTCATCATCGTCGTCGAATTCGCCGTGTGCTGCGTGCAAGATACAGCGGCGGAAGTGCACGCAGGAGTGTGTGTTCGCGCCGTATTTTCCGCCGGACAATCCGCAGCGGTTCGCGTACGTGCACAAGGTGTTCGGGGCGAGCAACGTGGCCAAGCTTCTCAACGAGCTTAACGCGGCGCAGCGCGAGGACGCGGTTAAGTCCTTGGCTTACGAAGCCGAAGCGCGTTTGCGGGACCCAGTGTACGGCTGCGTTGGCCTCATCTCTATCCTCCAGCACAAGCTCAAGCAGTTGCAGACCGAACTCCACCACGCCAAGAAGGAACTCGCTTCCTACATCGGACCCCACGCCTTGCTCCCTCCTCCTCCTCCCCCTCCCCCTCCCCCGCCGCCGCAGCAGCCACGCACTTTTTCTCTCTTTCCCTTCAAAACCGAGCCCACCACTCAGCACGATCTTTTCGGCGGGTTTAGCTTCAACGACGACGCCGCTTCTTCCGCTTCCCACGCCAGCGCCGCCTTCAACCACCTTGCTTTAATCTCGCCTTCCGCCGCCGTTGATCACGCGCCGATGCACTCTCTTGCTATTCCGCACCACCAACACTTCATGCGCTCACCGATGCAACCCAAGCCCCAAACCGACCCAGGTACGAATACTCAATACTGCTCCCTACTTAGTTCTTCTCAAATGGTGGAGGCAGCAAAATTGGGTGTAAAGAAGGAAGGAGAGACGACAAAGTTGCAGAATGAGAGAGGATGGAAGGAGGGGGAGAGAGATACGTGA 792 0.5783 MSSSSSSSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHKLKQLQTELHHAKKELASYIGPHALLPPPPPPPPPPPPQQPRTFSLFPFKTEPTTQHDLFGGFSFNDDAASSASHASAAFNHLALISPSAAVDHAPMHSLAIPHHQHFMRSPMQPKPQTDPGTNTQYCSLLSSSQMVEAAKLGVKKEGETTKLQNERGWKEGERDT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0236 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 184 - -
Aed10g0236 263 MobiDBLite consensus disorder prediction 240 263 - -
Aed10g0236 263 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Aed10g0236 263 MobiDBLite consensus disorder prediction 118 139 - -
Aed10g0236 263 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Aed10g0236 263 Coils Coil 92 112 - -
Aed10g0236 263 MobiDBLite consensus disorder prediction 120 139 - -
Aed10g0236 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 9 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0236 Aed-Chr10 1923042 1924522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0236 8 153 AS2 family AT5G66870 67.089 1.03e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed10g0236 LOB 2.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0236 - - gmx:100819170 326.635