Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0220 ATGGCAGCTATAACGGATATTTACAGTAGCACAGAGTTTCCACTCCAGTACTCAGATCCTTTCAGGGGTGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCTTCTTCTTTCCCTTCTACCAACTACTTCCCCTCCTCCCTTCCTAATTTTTACTCAAACCCCCAAAACTTAATAGGCTTCGGGCAAGTGCAACCCACATCTATTGTGGGCCTAAACCACCTAACCCCATCTCAGATCTCTCAGATCCAGGCCCAAATCCAGATCCAGGGCCAGCAGCAGAATCATCGCAGCAGCCTGAGCTTCCTTGGGCCGAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCCGAAGCCCACGAAGCTTTACAGAGGGGTGAGACAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTCCCGAAGAACCGGACCAGACTCTGGCTTGGAACCTTCGACACCGCGGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCGAGGCTGAACTTCCCGAACCTCCGACACGAGGGTTCCTCCGTGGGAGGAGACTTCGGGGAGTACAAGCCTCTTCATTCCTCTGTTGACGCCAAGCTTCAGGCCATTTGTGAAAGCCTGGCTGAGTTGCAGAAACAGGGGAAGACCGAGAAGAAGCCTCAGAAGAGGACGCGATCCAAAGCTGCTCCTCCTACTCCGCCGGAGAACAAGTCTTGTAAAGTCGAAGCTGCTTCCTCGTCGTCGACCACGACGGATCTGAGCGAGGGGTCAGAAGGTTCTTCGCCGCTTTCGGATCTGACATTCGCTGACGTGAGCGAGCCACAGTGGGAAGGGGATTCGGATAATTTCAATCTTAATCTCCACAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 930 0.5344 MAAITDIYSSTEFPLQYSDPFRGGELMEVLEPFMKSPSSSFPSTNYFPSSLPNFYSNPQNLIGFGQVQPTSIVGLNHLTPSQISQIQAQIQIQGQQQNHRSSLSFLGPKPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHEGSSVGGDFGEYKPLHSSVDAKLQAICESLAELQKQGKTEKKPQKRTRSKAAPPTPPENKSCKVEAASSSSTTTDLSEGSEGSSPLSDLTFADVSEPQWEGDSDNFNLNLHKYPSYEIDWDSL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0220 309 MobiDBLite consensus disorder prediction 248 277 - -
Aed10g0220 309 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Aed10g0220 309 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Aed10g0220 309 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Aed10g0220 309 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Aed10g0220 309 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Aed10g0220 309 MobiDBLite consensus disorder prediction 220 293 - -
Aed10g0220 309 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Aed10g0220 309 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Aed10g0220 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 308 - -
Aed10g0220 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 308 - -
Aed10g0220 309 CDD AP2 124 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0220 Aed-Chr10 1766665 1767594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0220 1 309 AP2-EREBP Transcription Factor Family AT1G78080 52.874 5.06e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed10g0220 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0220 K09286 - gmx:100800478 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0220 10 1766665 1767594 Aed10g0220 10 1766665 1767594 ECH