Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0204 ATGCAAGGCCATGACGAAAGAGGGAAACAGCCTCCTCTTTGCGTGCATGGGAGGGGTTCCTCCGACAAGCATTCATTCGCCATGTGTTACATGGAAGTGTCAAATCTATTATCGGCCCGCCTAATAAAGATTGCGAAATATTACTACACAATGGGAAGATCTCCATGCTGCGATGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTAGTCCAACACATTCAGGAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGCTTGCCGGTCTTAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAAGGCCAGATATCAAGAGGGGGAAATTTTCTCAAGAAGAGGAACAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACCCACCTACCAGGAAGGACAGACAATGAGATAAAGAATTTCTGGAACACTCATTTGAAGAAGAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAGCCAAGAACTGACCTTGTTTCCACCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCACCATAATCAGTCATTGGATGAACATGCTATGAGGCTACAAGCAGAGGCAGTCCAGCTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCCTCAAACTCCTTGAGCAGCACCACCACCAACTCCTATGATCATGACCAAACTGCCACCACAATAACCAACATGGAACAAACAGCTTTCAGCAGTTTGTTGAACTCAATCTCCAATGTGAAAGAGATTAATCCTCCAGTCATATTGCAACCACCAGATACTACTACTACTACTACTCCTGCCTCGTTTTCTCATCATGGCATTGCTAGCTCTCAACCACTCCACCACCAAAACGTGCTACCTCACCTTTTAGACCCACAACAACAACAAAAAGTCTCTTTCAGTACTTCTCAATCATGTTTGAATAATAGTGAGATGGGGGAAGGTACTAACTTTGCAATGATAAGTCAAGGGGATATTCACACGGACGTTGATCATGACTCTTCCTGGATTAATATTATTCCATCATCTATTACTCTTCCAGGAGATGCCAGCAGCAGCAGCACTTCTAGCTATGCAGGAGCTGGACCCTCCTCTTATTATTGGTCGTCCGAACTACTTTTTGAGGATCCCATCATGCATGACCTATCTTAG 1230 0.4407 MQGHDERGKQPPLCVHGRGSSDKHSFAMCYMEVSNLLSARLIKIAKYYYTMGRSPCCDENGLKKGPWTPEEDQKLVQHIQEHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTDLMDHHNQSLDEHAMRLQAEAVQLAKLQYLHYLIQSSSNSLSSTTTNSYDHDQTATTITNMEQTAFSSLLNSISNVKEINPPVILQPPDTTTTTTPASFSHHGIASSQPLHHQNVLPHLLDPQQQQKVSFSTSQSCLNNSEMGEGTNFAMISQGDIHTDVDHDSSWINIIPSSITLPGDASSSSTSSYAGAGPSSYYWSSELLFEDPIMHDLS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0204 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 166 IPR017930 -
Aed10g0204 409 Gene3D - 63 116 - -
Aed10g0204 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 51 368 - -
Aed10g0204 409 SMART sant 63 113 IPR001005 -
Aed10g0204 409 SMART sant 116 164 IPR001005 -
Aed10g0204 409 ProSiteProfiles Myb-like domain profile. 59 111 IPR001005 -
Aed10g0204 409 Gene3D - 119 166 - -
Aed10g0204 409 SUPERFAMILY Homeodomain-like 61 158 IPR009057 -
Aed10g0204 409 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 51 368 - -
Aed10g0204 409 CDD SANT 66 111 IPR001005 -
Aed10g0204 409 CDD SANT 119 162 IPR001005 -
Aed10g0204 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 111 IPR017930 -
Aed10g0204 409 ProSiteProfiles Myb-like domain profile. 112 162 IPR001005 -
Aed10g0204 409 Pfam Myb-like DNA-binding domain 117 162 IPR001005 -
Aed10g0204 409 Pfam Myb-like DNA-binding domain 64 111 IPR001005 -
Aed10g0204 409 MobiDBLite consensus disorder prediction 277 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0204 Aed-Chr10 1629886 1632347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0204 51 409 MYB Transcription Factor Family AT1G34670 53.281 9.68e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g0204 Myb_DNA-binding 8.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0204 K09422 - gmx:100782792 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0204 10 1629886 1632347 Aed10g0204 10 1629886 1632347 ECH