Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0194 ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCCATTTCTTCTAATTTGGATGCAAATGCAATGGCTCATCACCCTCATTACCGGTCACCCTTCGGTGACACAACTTTCACCAAATTGTTCGTCGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCACCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACTGACAAGAACACCGGCAAATCCAAAGGCTACGGTTTCGTAACATTCTGCGATCAAGAATCAGCTAGAAGAGCATGTGCTGATCCAAATCCAATCATAGATGGAAGAAGAGCTAATTGTAATATTGCTTCTCTTGGAAGGACTAGACCATCACCACCTCGAGGGAGAAATATAGTTCAAGGTGGAGGAGGAATAACACATGTTGCTCCGCAGTCACTGCCGCCACCACCACAGCCTGTTCTGTACCCACCATATGGCTATACAACCTACCCTCCTGATTATGGGTACCACCAAGCCACAATGTACAACCCACAGATTCATCAGCAACCACAATACTATCAACAAGTCTATGCAGGAGCATCTTCCACCATGAACACCCCATATTACTATGGCTATTCTGTGCAGCAAGCACCAAGAAACACATTTTCTTCACCCCAGCAAGCAAATCGTGTATCAGCTGGACCGTCCTATCTATACTACCCTACACCCATGGAAGTCTCATTCTCAGGATATCGTCCACCCCAACAGCAATCACCAATGAGGCAATCCTTTCCTTCTTCCCCTAATGATTCACAGTCACAGAGTCTGCAGCAGCGTAACTCCTCTGAAACAGCAGGCGGGGTAGCTATAAGTTCAGAAAGATCAAATACCCAAGGGAAGAACTAA 882 0.4626 MSETASLHAQTRTPISSNLDANAMAHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFHQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGITHVAPQSLPPPPQPVLYPPYGYTTYPPDYGYHQATMYNPQIHQQPQYYQQVYAGASSTMNTPYYYGYSVQQAPRNTFSSPQQANRVSAGPSYLYYPTPMEVSFSGYRPPQQQSPMRQSFPSSPNDSQSQSLQQRNSSETAGGVAISSERSNTQGKN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0194 293 PANTHER - 24 283 - -
Aed10g0194 293 PANTHER GEO13361P1-RELATED 24 283 - -
Aed10g0194 293 SMART rrm1_1 41 113 IPR000504 GO:0003723
Aed10g0194 293 MobiDBLite consensus disorder prediction 240 293 - -
Aed10g0194 293 CDD RRM_RBM24_RBM38_like 40 115 - -
Aed10g0194 293 Gene3D - 5 136 IPR012677 -
Aed10g0194 293 MobiDBLite consensus disorder prediction 241 293 - -
Aed10g0194 293 SUPERFAMILY RNA-binding domain, RBD 27 136 IPR035979 GO:0003676
Aed10g0194 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 117 IPR000504 GO:0003723
Aed10g0194 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0194 Aed-Chr10 1544291 1548343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0194 36 116 C2H2 Transcription Factor Family AT2G19380 38.272 1.10e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0194 K25006 - gmx:100811977 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0194 10 1544291 1548343 Aed10g0194 10 1544291 1548343 ECH
Aed3g1663 3 21294738 21300317 Aed10g0194 10 1544291 1548343 PCT