Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0176 ATGGCGCTACTACGTCTTGCCGTGTGCTTAACTTCAACACATCAATTATCCACTCAACCCCATTCCCAATCCACCTCTTTCTCTTTTCTTCGCAAGACACCCCATTCTCAATCCATCAATATCAATCCCTCTTCCTTTCACTTTCCAAGCCTATCCTTTATCACAACCAAACAAACCCTTAACCTCGCCGCCTCCACTTCCCAGCAACAACAAACCGAGCCTGTTGTCTCCGAAGAAGAATTCTCTCGCACCAGATTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGACATTCGCTCTCTCTTCGAAAAACATGGCAAAGTCCTCGAAGTCGAGCTTTCTATGTTTAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAGGCGCTTCAAGCTCTCCATAATCTCGAATCGCCTGTGGTGAGCTTTAACTTGTTTGTCGCTAACTTGTCTTATGAAGCGAGCTCCAAAGATCTCAAGGAGTTTTTTGATTCGGGAACTGGTAAAGTTGTTTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCATCCGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGAGGATGCTCTTTCTGAGTTCCAAGGAAAGGATTTTATGGGAAGGCCAATCAGGGTGGACCGGGGTCGGCGGTTTGTTCAACAACCAAGGGAAGGGAGCGCGAAGTCTGAAGATACTACTTCTGAGTTAAGTGTGAGTGGGGAAGAAGCTCAACAACCAGCGGAGGGGAGTGCAAAGTCTGAAGATACTCCTGAGTTGAATGTGAATGGCGCAGAAGCTGACAAAGCTGATTGA 852 0.4742 MALLRLAVCLTSTHQLSTQPHSQSTSFSFLRKTPHSQSININPSSFHFPSLSFITTKQTLNLAASTSQQQQTEPVVSEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMFKKNRNRGLAFVEMGSPEEALQALHNLESPVVSFNLFVANLSYEASSKDLKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSFKSKKEAEDALSEFQGKDFMGRPIRVDRGRRFVQQPREGSAKSEDTTSELSVSGEEAQQPAEGSAKSEDTPELNVNGAEADKAD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0176 283 Gene3D - 54 146 IPR012677 -
Aed10g0176 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 161 IPR000504 GO:0003723
Aed10g0176 283 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 146 258 - -
Aed10g0176 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 230 IPR000504 GO:0003723
Aed10g0176 283 MobiDBLite consensus disorder prediction 227 283 - -
Aed10g0176 283 SMART rrm1_1 85 151 IPR000504 GO:0003723
Aed10g0176 283 SMART rrm1_1 152 226 IPR000504 GO:0003723
Aed10g0176 283 SUPERFAMILY RNA-binding domain, RBD 48 144 IPR035979 GO:0003676
Aed10g0176 283 Gene3D - 147 267 IPR012677 -
Aed10g0176 283 MobiDBLite consensus disorder prediction 227 243 - -
Aed10g0176 283 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 146 - -
Aed10g0176 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 224 IPR000504 GO:0003723
Aed10g0176 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 144 IPR000504 GO:0003723
Aed10g0176 283 PANTHER OS08G0483200 PROTEIN 1 146 - -
Aed10g0176 283 PANTHER OS08G0483200 PROTEIN 146 258 - -
Aed10g0176 283 MobiDBLite consensus disorder prediction 244 270 - -
Aed10g0176 283 CDD RRM_SF 153 226 - -
Aed10g0176 283 CDD RRM_SF 90 144 - -
Aed10g0176 283 SUPERFAMILY RNA-binding domain, RBD 150 237 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0176 Aed-Chr10 1400478 1405382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0176 84 237 Eukaryotic Initiation Factors Gene Family AT3G16380 27.500 4.63e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0176 - - gmx:100790439 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0176 10 1400478 1405382 Aed10g0176 10 1400478 1405382 ECH