Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0175 ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTTGCGTATGGTTGCAACAACAAGGATTATTTGTACTCCTTATTACCCAACTACGCTAATAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAGCAACACAATGTTGCAAAATGTGAAGGACCAATGGGATTCTCACTCCTCCCCTGAACCATCCATGACCATGACTACTACTGCTCCTTCTTCCTCCGTTGGTCGCCGCAAACGACGTCGCACGAAGAGCGCGAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTTGAACGCAACCGCAGAAAACAGATGAATGAGTACTTAGCTGTGCTCCGATCCTTGATGCCTTCCTCTTATGTTCAAAGGGGTGATCAAGCGTCTATTATTGGAGGGGCCATTAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGTGAGAAGAGAACGAAGCAAGAGGAGAATGATGATACTAGAACTACAACAACACTACCCTTTGCAGAGTTCTTCACGTTTCCTCAATACACGACACGTGGCACGGCGATAGCAGACATTGAAGTGACAATGGTGGATAGCCATGCGAATCTAAAAGTACTCTCAAAGAAACAACCTGGGCAGCTTATGAAGATCGTTGTTGGCCTTCAGAGTCTCAGCCTCGCCATTCTCCACCTCAATGTTTCCACTCTCCACGATATGGTCCTTTACTCAATTAGCGTCAAGGTAGAAGACGGGTGTCAGCTGAACACAGTCGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCACAATTCAACAAGGATATGTATCTGTGATTGTGTTGCTCTTTATATAG 876 0.4612 MALEAVVFPQDPFAYGCNNKDYLYSLLPNYANNFQAAEEEKVLLGIINSNTMLQNVKDQWDSHSSPEPSMTMTTTAPSSSVGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGEKRTKQEENDDTRTTTTLPFAEFFTFPQYTTRGTAIADIEVTMVDSHANLKVLSKKQPGQLMKIVVGLQSLSLAILHLNVSTLHDMVLYSISVKVEDGCQLNTVDEIAAAVNQLLRTIQQGYVSVIVLLFI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0175 291 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 282 - -
Aed10g0175 291 SMART finulus 106 157 IPR011598 GO:0046983
Aed10g0175 291 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Aed10g0175 291 Gene3D - 90 178 IPR036638 GO:0046983
Aed10g0175 291 MobiDBLite consensus disorder prediction 58 80 - -
Aed10g0175 291 Coils Coil 148 175 - -
Aed10g0175 291 MobiDBLite consensus disorder prediction 58 98 - -
Aed10g0175 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
Aed10g0175 291 CDD bHLH_AtFAMA_like 103 169 - -
Aed10g0175 291 PANTHER MAX DIMERIZATION, MAD 1 282 - -
Aed10g0175 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 170 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0175 Aed-Chr10 1394046 1395161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0175 1 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 52.158 1.87e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g0175 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0175 - - gmx:100789380 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0175 10 1394046 1395161 Aed10g0175 10 1394046 1395161 ECH
Aed3g1696 3 21612011 21614221 Aed10g0175 10 1394046 1395161 PCT