Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0174 ATGAGTACCACTCTCACTCTCCATCATGACCCTCCCCGCTTTCTCCGTTTTCTCTTCTATTTTTTTCTCCTCACACTCACACAGTTTCCGCCGCCGGCCACCGCGCAGCTCCCGAACACGCTGTCGCCTCCGCCGCCGCAAGAGGACCGGTTTTCGAGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGGTGATCCTGGTCGCGGTGTTCTTCGTCCTGGGATTCCTCTCCGTGTACACGCGCCAGTGCGCTGAGCGTAGGATGCGAGGAAGGTTCGACCTCTCCATCTCGATCTCGATCCCGCGCCGGCAACGCGGTTTGGACCGCGACATCATCGAAACGTTTCCGACGTTCGTGTACTCGACAGTGAAGAGCCGGAAAATAGGACTCGCCACGCTGGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATCCCTAAGTGCAGTCACGTGTTCCACCCCGACTGCATCGACGCCTGGCTCGCTAATCACTCAACTTGCCCCGTCTGTCGCGCCAATCTTGTCCCCAAACCCGACGACCCGTCTTTTCTTCCCATCCAATTCCCGGATCCGGAACAGCAGCCCGTTTTAAATACATTGACCCGACCCGAAACTGATGACTCTCAGAAGGTTAATGATGATTTGATTAGTGAGACTGAGAACCGTATGCTGCCCTTGCGGTCAAGGTCAACGGGGCACTCGCTGGTTCAACCCGGGGAGAATTGCGAGAGGTTTACTCTGCATTTGCCTGAGGAAGTGCGGAACCAGCTGATGCTGAGTCGCACCAAGAGTTGCGGCGTGAACGTGACGTTCACGCGCGAGAACAGTGAAAGAAGAGGTTACAGGACTAGGAGCGTTGGTAGCACTGCTCCTCACGTGACGGGGTGGTTTTCTCGGACACGCTCGGTGAAGGATGATGTCGGGGAACGGTCTTCGGATCGGTTATTCTCTACGACCACGACAAGGGATAGTGAGGTTTAG 1002 0.5609 MSTTLTLHHDPPRFLRFLFYFFLLTLTQFPPPATAQLPNTLSPPPPQEDRFSRLKFDKSMAIVLVILVAVFFVLGFLSVYTRQCAERRMRGRFDLSISISIPRRQRGLDRDIIETFPTFVYSTVKSRKIGLATLECAVCLNEFEEDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLVPKPDDPSFLPIQFPDPEQQPVLNTLTRPETDDSQKVNDDLISETENRMLPLRSRSTGHSLVQPGENCERFTLHLPEEVRNQLMLSRTKSCGVNVTFTRENSERRGYRTRSVGSTAPHVTGWFSRTRSVKDDVGERSSDRLFSTTTTRDSEV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0174 333 SUPERFAMILY RING/U-box 130 186 - -
Aed10g0174 333 MobiDBLite consensus disorder prediction 305 333 - -
Aed10g0174 333 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Aed10g0174 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Aed10g0174 333 Pfam Ring finger domain 135 178 IPR001841 -
Aed10g0174 333 SMART ring_2 136 177 IPR001841 -
Aed10g0174 333 PANTHER RING-H2 FINGER PROTEIN ATL11 12 275 - -
Aed10g0174 333 MobiDBLite consensus disorder prediction 197 216 - -
Aed10g0174 333 PANTHER RING FINGER DOMAIN-CONTAINING 12 275 - -
Aed10g0174 333 CDD RING-H2_PA-TM-RING 135 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0174 Aed-Chr10 1381761 1382762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0174 14 287 Rapid Response to Elicitors AT3G05200 42.525 1.83e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0174 K10664 - gmx:100805815 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0174 10 1381761 1382762 Aed10g0174 10 1381761 1382762 ECH
Aed3g1698 3 21632039 21633178 Aed10g0174 10 1381761 1382762 PCT