Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0157 ATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCTGCGCTACCCGACGATGACGACGACAACGATACTATGGATGAGTTGGAGGAGGATGCGAACGTTAATTCAGTGAACGTTGCGAGTGTAAATCATGAACCGCTGGTTGCCATGCCTTCCAGAACTAGCGAGCTCACCCTTTCTTTCGAGGGCGAGGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTGCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGTGTGCCTGCAGTTAAACTACCATTTGATCAAAGTAACAGGGGCATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTCCGCGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCAGTGAGAAAAGAGGTGGCACAAAGGATGCATCGGAAGAATGGGCAGTTTGCATCCTTGAAGGAAGGCCCGGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGATGGCACTTCTCCTTCTGAATCAGTACGTAGATGTCACCATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAACGCGTGTGGCCTTATGTGGGCTAATAAGGGCACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTCTCTGTTGAGCAAAGTGATCTGGGTAGTTCTGAAGATCCTTCCAAGTCCAACACAGCTGATGGTTCTAGTAATCATGTTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGAACACTTTACGAACACTCTGCCACTGGGCATTGGTCATTCTTCAACAAATGACAATGAGCAGGAACCTTTGGTCGAGCTTTCTAATCCTTCAGATACAGACATTGACATTCCAGGAAACTTTGATTAG 954 0.478 MATVNPQPLQFEDPALPDDDDDNDTMDELEEDANVNSVNVASVNHEPLVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQASVPAVKLPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKEGPGSSNWDSAQSSGQDGTSPSESVRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLGSSEDPSKSNTADGSSNHVVNPSDEELPETAEHFTNTLPLGIGHSSTNDNEQEPLVELSNPSDTDIDIPGNFD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0157 317 MobiDBLite consensus disorder prediction 235 267 - -
Aed10g0157 317 ProSiteProfiles CCT domain profile. 119 161 IPR010402 GO:0005515
Aed10g0157 317 Pfam CCT motif 119 160 IPR010402 GO:0005515
Aed10g0157 317 MobiDBLite consensus disorder prediction 228 317 - -
Aed10g0157 317 ProSiteProfiles GATA-type zinc finger domain profile. 184 243 IPR000679 GO:0006355|GO:0043565
Aed10g0157 317 Gene3D - 182 241 IPR013088 GO:0006355|GO:0008270
Aed10g0157 317 CDD ZnF_GATA 189 233 IPR000679 GO:0006355|GO:0043565
Aed10g0157 317 MobiDBLite consensus disorder prediction 152 188 - -
Aed10g0157 317 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 234 - -
Aed10g0157 317 MobiDBLite consensus disorder prediction 1 28 - -
Aed10g0157 317 ProSitePatterns GATA-type zinc finger domain. 190 217 IPR000679 GO:0006355|GO:0043565
Aed10g0157 317 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 317 - -
Aed10g0157 317 SMART GATA_3 184 237 IPR000679 GO:0006355|GO:0043565
Aed10g0157 317 SMART tify_2 51 86 IPR010399 -
Aed10g0157 317 MobiDBLite consensus disorder prediction 161 184 - -
Aed10g0157 317 Pfam tify domain 53 85 IPR010399 -
Aed10g0157 317 PANTHER GATA TRANSCRIPTION FACTOR 28 1 317 IPR045280 GO:0006355
Aed10g0157 317 MobiDBLite consensus disorder prediction 283 303 - -
Aed10g0157 317 MobiDBLite consensus disorder prediction 14 28 - -
Aed10g0157 317 Pfam GATA zinc finger 190 226 IPR000679 GO:0006355|GO:0043565
Aed10g0157 317 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0157 Aed-Chr10 1216867 1222179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0157 5 232 Tify Gene Family AT1G51600 47.791 4.68e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed10g0157 CCT 8.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0157 - - gmx:100801328 554.288