Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0156 ATGTACAGCCCCATGAACCAGATCGTCTCCGCCGAAGACACCGACGGCGCCGCCTCCAACCACCACATTCTCTACAGTTCCCACACCATCGAAGACACCGACGGAGACCACCACATTCATTATAGTTCCCACACCATCGAAGACACCGACGGCGACCACCACATTCATTACAGTTCCCACACCATCGAAGACGGCCCCGCCGCCGTCGAAGACGTTGCCGCCGACTCCGTCTACGTTCCGCCCCCTGAAATCTCTATCGATGACTCTAGTCAGCTCACGCTCTCGTTTCGCGGCCAAGTTCAAGCAGTCTTGTTGCTGTTGGGAGGAAGTGAACTAACTCCGGGTTCACAATGTGCGGAGATATCGTCTCAAGATCAGAGGGGAGCGGAGGAATATCCTGCAAAATGTGGTTTACCACAGCGTGAGGTGTCATTAAGTAGGTTCCGACAGAAGAGGAAAGAACGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCAAAGAATCAAGATGGAACTAATAGTTGGGGTTCAGATCAGGAGTCAGGGCAGGATGCTGTTCAATCAGAAACCTTGTGCACACACTGTGGAATAAGTTCAAAAGGCACTCCAATGATGCGAAGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCATGAACACTCTCTTGCACCACCTGAGCAGGTTGATGAGGGTGGTAATAATGACTTGGACTGTCGGAATGCTATCCCTGCACAACATAACAATCTTGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 891 0.4905 MYSPMNQIVSAEDTDGAASNHHILYSSHTIEDTDGDHHIHYSSHTIEDTDGDHHIHYSSHTIEDGPAAVEDVAADSVYVPPPEISIDDSSQLTLSFRGQVQAVLLLLGGSELTPGSQCAEISSQDQRGAEEYPAKCGLPQREVSLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCTHCGISSKGTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNHEHSLAPPEQVDEGGNNDLDCRNAIPAQHNNLVNDNKALVSDR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0156 296 CDD ZnF_GATA 209 253 IPR000679 GO:0006355|GO:0043565
Aed10g0156 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 255 - -
Aed10g0156 296 PANTHER GATA TRANSCRIPTION FACTOR 28 19 278 IPR045280 GO:0006355
Aed10g0156 296 ProSitePatterns GATA-type zinc finger domain. 209 236 IPR000679 GO:0006355|GO:0043565
Aed10g0156 296 MobiDBLite consensus disorder prediction 176 200 - -
Aed10g0156 296 PANTHER GATA TRANSCRIPTION FACTOR 25 19 278 - -
Aed10g0156 296 SMART GATA_3 203 256 IPR000679 GO:0006355|GO:0043565
Aed10g0156 296 MobiDBLite consensus disorder prediction 174 200 - -
Aed10g0156 296 Pfam CCT motif 141 183 IPR010402 GO:0005515
Aed10g0156 296 Pfam GATA zinc finger 209 245 IPR000679 GO:0006355|GO:0043565
Aed10g0156 296 ProSiteProfiles GATA-type zinc finger domain profile. 203 252 IPR000679 GO:0006355|GO:0043565
Aed10g0156 296 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Aed10g0156 296 Gene3D - 200 258 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0156 Aed-Chr10 1210921 1214396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0156 81 295 Tify Gene Family AT4G24470 54.918 1.00e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed10g0156 CCT 1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0156 - - gmx:100809517 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1741 3 22022948 22027582 Aed10g0156 10 1210921 1214396 PCT