Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0148 ATGCCGGAGAAGAAGAACAATAAACTCTCCTTCACTGAAGAAGACGCTGTGACACTCATGCAGAGGTACGATGCAACTACGGTGTTAACTTTACTTCAGGAAGTGGCGCATTACGCTCAAGCGAAGATTGATTGGAGGGAGTTGGTGAAGAAAAGTGCCACTGGGATTTCTAACGCCAGGGAATATCAAATGCTGTGGCGGCACTTGGCCTATCGTCATTCCTTGCCTCAAAATTTCGATGATGGAGCTGAACCTTTGGATGATGATAGTGACCTAGAGTGCGAGCTAGAAGCATTACCCCCTGTAAGTGTGGAATGTACATCAGAGGCTGCTGCATGTGTGAAGGTTTGGGTTGGATGGGTTACAGTTTTAGGTAGGCCTATTAAACTGGTTCGCATGACGATGACGATGAGGAGAAGCATGTTGATTCTTAACGGCAACGGTGTTGTTGGACGACAATGCCAAGTGAAGGGAACTCGGTGGTGGCATAGGAGAAAATCAAATCTATTGCTTTTCTGTTACCACGTAATGATTGGTTCTCGTACACTGAGTGAATCTGCCCCTAGTAGCTCAACAATCGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTAGAACTCCTATTGAAAATTCTCAACCCTCTAATTTGAAGCAAGGGACAAGCATTATTTTTCCAGTTACTGTTCAGAGACAGACGCTGCCATCTATATCATCGACAGATAATATGGAAGGCAAGGGATCAGTTGGTGGTAGCATGGCTTCAAAAAGAAAAAGACAGCCATGGTCAGAAGAAGAGGACATGCAGCTACGAGCTGCTGTTCAGAAATGGGGTGAAGGGAATTGGGCAACCATGTCAAAAGGAGACAACTTTCCTATTAGGAGAAGCGCTACACAGTTGGCTCAGAGGTGGAGCATTTTACGAAAGAAAGAGGGTTGTACCAATTCAGGAACCATCTCAACCAGCACGCAGTATACTACTGCTGAACAGCTGGCAACTAGACACTCCTTATCTTTAGCCCTTGACATGCCATTCAAAAAGTTAACTGCTCCTGGAATGACTGACGAAGTGAAGACGGTTGTTCCAGAGTCGGTGTTGAAGAAGCAGAAGAGGGAGGAGGAATGGGCGTTGGCGAAGAAGCAAGAACTTGATGCTGCCAAGAAAAACAGAGCTCAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACTCTAAGGAGTATGATCACCAGGAGAAGGAGTTAATTCGCTTGAAACGCGAGGCCAAGCTGAAAGGTGGGTTCTATGTGGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAATCAAGGAAGATCCTGCAGTTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCATAGAGTTGAGCCGTATGTGACTTATGGATACCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGTTAAGCCATCATTAGTTAGAAATCAAGTGCAGATTAGAAATACTACAGAGAAGGTTGCCAGTAGTTTTGTACCACCTCAACAAGCTTTGTTGGGTTCTTCTGATTCGCATGCAAAATCCAAATTAGCAGATGAAAAACCAGTCTTGAAGGGTAATCTAATTTCAGATCCTGTGGTAAAATCTACCACAGCAACTTTGGGGATACGAATTGATCCCCTTTCAAACACTATATCACAAATTAAAGTTGCTCAAGTAAAAAATGCTCTAGATACCAAGCCAGCAATTAGCTCTTTGACAAAGCCATCCATCTGTACCAATTTGCCTTCTGACCCCAAGAACAAACATGTTACCCCTTTGGCTGATAAAGGTGCTCAAGTAAAAAATGCTGTGGATACTAAGCCTGCAGTTGGCTCTTTGACAAAGCCACCCATTTCTACCAATTTGCTTTCTGACCCAAAGAACAAACTTGTTGCCCCTTTGGCTGATAAAGTTCCATTGAAACAAGATGTTAATCCCACAAAAGAGTCAAGAGTTTCTGACCTCAGCACCACACCAAAAGAGAAGGTACAAGAAAATGAGCCTTCTAAAGTTACTACTGGAAGTCAGGTTGATAGCAACAACACAGAGAAGGGAAGATTAGATAAAGGTCAAGCGATGAGCACACCTCTTGTTAAAATTAGTTGTGAGGAAATTTCAAAAGATAAAACAAATCCAGTTGCATGTGAAGAGCAAGGTAGTGTTAAGAAGGCTACTGAGAATAGCAACATTGACAAGGGGAGTCAAAATTTAGATCAAGACAAGAAGATAAATTCAATTAATCACAGTTCAAATGATCAAAACGTGAATGAAAAACAAGTAAATTTGCCAGTACAAGATGAATGCAGCCAAAGTGCCAACAAGGTAGTAAAAACTGATGGGAAATGTTGA 2445 0.4249 MPEKKNNKLSFTEEDAVTLMQRYDATTVLTLLQEVAHYAQAKIDWRELVKKSATGISNAREYQMLWRHLAYRHSLPQNFDDGAEPLDDDSDLECELEALPPVSVECTSEAAACVKVWVGWVTVLGRPIKLVRMTMTMRRSMLILNGNGVVGRQCQVKGTRWWHRRKSNLLLFCYHVMIGSRTLSESAPSSSTIEAPLTINVPVCHSSRTPIENSQPSNLKQGTSIIFPVTVQRQTLPSISSTDNMEGKGSVGGSMASKRKRQPWSEEEDMQLRAAVQKWGEGNWATMSKGDNFPIRRSATQLAQRWSILRKKEGCTNSGTISTSTQYTTAEQLATRHSLSLALDMPFKKLTAPGMTDEVKTVVPESVLKKQKREEEWALAKKQELDAAKKNRAQSRKLIYNRAKQYSKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRVKPSLVRNQVQIRNTTEKVASSFVPPQQALLGSSDSHAKSKLADEKPVLKGNLISDPVVKSTTATLGIRIDPLSNTISQIKVAQVKNALDTKPAISSLTKPSICTNLPSDPKNKHVTPLADKGAQVKNAVDTKPAVGSLTKPPISTNLLSDPKNKLVAPLADKVPLKQDVNPTKESRVSDLSTTPKEKVQENEPSKVTTGSQVDSNNTEKGRLDKGQAMSTPLVKISCEEISKDKTNPVACEEQGSVKKATENSNIDKGSQNLDQDKKINSINHSSNDQNVNEKQVNLPVQDECSQSANKVVKTDGKC 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0148 814 ProSitePatterns Ribosomal protein L30 signature. 457 489 IPR018038 -
Aed10g0148 814 Pfam Ribosomal protein L30p/L7e 439 489 IPR016082 -
Aed10g0148 814 Coils Coil 403 423 - -
Aed10g0148 814 MobiDBLite consensus disorder prediction 674 699 - -
Aed10g0148 814 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 809 - -
Aed10g0148 814 MobiDBLite consensus disorder prediction 673 724 - -
Aed10g0148 814 Pfam Myb-like DNA-binding domain 261 306 IPR001005 -
Aed10g0148 814 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 809 - -
Aed10g0148 814 ProSiteProfiles Myb-like domain profile. 256 310 IPR001005 -
Aed10g0148 814 Gene3D - 254 317 - -
Aed10g0148 814 SUPERFAMILY Homeodomain-like 259 312 IPR009057 -
Aed10g0148 814 MobiDBLite consensus disorder prediction 753 788 - -
Aed10g0148 814 CDD Ribosomal_L7_archeal_euk 438 525 IPR035808 -
Aed10g0148 814 MobiDBLite consensus disorder prediction 239 267 - -
Aed10g0148 814 Pfam Ribosomal L30 N-terminal domain 363 434 IPR012988 -
Aed10g0148 814 Gene3D - 438 527 IPR036919 -
Aed10g0148 814 MobiDBLite consensus disorder prediction 744 788 - -
Aed10g0148 814 CDD SANT_TRF 262 311 - -
Aed10g0148 814 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 314 IPR017930 -
Aed10g0148 814 SUPERFAMILY Ribosomal protein L30p/L7e 438 509 IPR036919 -
Aed10g0148 814 MobiDBLite consensus disorder prediction 605 657 - -
Aed10g0148 814 SMART sant 260 312 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0148 Aed-Chr10 1110016 1123385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0148 358 506 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 87.248 7.29e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed10g0148 Ribosomal_L30_N 2.6e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1734 3 21955993 21959993 Aed10g0148 10 1110016 1123385 PCT