Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0134 ATGACTCGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACGTTTTCTAAGAGGAGGAGAGGGTTGTTCAAGAAAGCTGAAGAGCTCTCTGTGCTGTGCGATGCTGAGGTGGGTCTCATTGTTTTCTCATCCACCGGGAAGCTCTTTGATTATGGTAGCTCCAGTTTATGCACATTTCCCAAAGAATATATAATCATGCATGTAGGGAATGGAGTCGAGGACATGGACAAATTAACGGATGTTGGTATTCTTGCTATATATAGGGTTTAA 288 0.4271 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYGSSSLCTFPKEYIIMHVGNGVEDMDKLTDVGILAIYRV 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0134 95 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Aed10g0134 95 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed10g0134 95 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Aed10g0134 95 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed10g0134 95 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 83 - -
Aed10g0134 95 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 83 - -
Aed10g0134 95 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed10g0134 95 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed10g0134 95 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed10g0134 95 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed10g0134 95 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0134 Aed-Chr10 1024733 1026459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0134 1 73 MADS-box Gene Family AT2G22540 72.603 1.20e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed10g0134 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0134 - - gmx:100776749 117.087