Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0127 ATGAATTCCGGCCGCAAAGGGTCGGTGAGATACAGAGAATGTCAGAAGAACCACGCCGTCAGCATCGGCGGCCACGCGGTCGACGGCTGCTGCGATTTCTTAGCCTCCGGAGAGGAAGGCTCGCTCGAGGCCGTAATTTGCGCCGCCTGTAACTGCCACCGCAATTTCCACCGCAAGGAGATCCACGGCGCCGAAACCAGCCCTTACCACCAGCGTTCGCAGCCTCAGCCTCTGCACCCTCAGTACCACCACCAGTTCTCCCCTTACTACCACCGCGGGCCACCACCTTCCGCCGCCGGATACCTACACCACCACCTGGTAACTCCTCCGGTGTCGCAGCACCGGCCCTTGGCTCTCCCACCGCTAGCTTCTGGAGGAGTGTTCAGTAGGGAAGAAGAAGATATGTCAAACCCCAGCTCCAGCGGCGGAGGCGGCGGCGGTGGTGGTAGCGCTAATTCTGAGCAACGTTCTGCTGGGAATGGATCGAATCACTTGAACAACACCACAATAATTGAGAATTCTGAATTCTCTTAA 534 0.5843 MNSGRKGSVRYRECQKNHAVSIGGHAVDGCCDFLASGEEGSLEAVICAACNCHRNFHRKEIHGAETSPYHQRSQPQPLHPQYHHQFSPYYHRGPPPSAAGYLHHHLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGGGSANSEQRSAGNGSNHLNNTTIIENSEFS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0127 177 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 10 61 IPR006456 -
Aed10g0127 177 Pfam ZF-HD protein dimerisation region 9 61 IPR006456 -
Aed10g0127 177 MobiDBLite consensus disorder prediction 67 81 - -
Aed10g0127 177 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 154 - -
Aed10g0127 177 MobiDBLite consensus disorder prediction 65 177 - -
Aed10g0127 177 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 11 60 IPR006456 -
Aed10g0127 177 MobiDBLite consensus disorder prediction 133 177 - -
Aed10g0127 177 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0127 Aed-Chr10 972745 975043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0127 7 143 ZF-HD Transcription Factor Family AT4G24660 49.275 1.15e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed10g0127 ZF-HD_dimer 7.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0127 - - gmx:100820567 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0127 10 972745 975043 Aed10g0127 10 972745 975043 ECH
Aed3g1710 3 21711078 21712301 Aed10g0127 10 972745 975043 PCT